RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA886442", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA886442 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26928930 26928930 PRJNA886442_P_NODE_9122_length_267_cov_1.536082_g8958_i0 PRJNA886442 9122 267 1.536082 4.10133894 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 87 1.35e-17   NR MBX9704502.1 2654442 g8958 i0 97.7 2.47191011235955 44 1 49.4 0 267 136 721 764 MBX9704502.1 photosystem I core protein PsaB [Silvanigrellaceae bacterium] diamond 660 87 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
29013731 29013731 PRJNA886442_P_NODE_12988_length_247_cov_0.896552_g12824_i0 PRJNA886442 12988 247 0.896552 2.21448344 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 124 3.29e-32   NR MBS1960183.1 2053517 g12824 i0 69.5 0.995951417004049 82 25 99.6 0 246 1 176 257 MBS1960183.1 hypothetical protein [Bdellovibrionales bacterium] diamond 246 124 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;