RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA886442" and tax_clade = "Haptista"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA886442 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25087940 25087940 PRJNA886442_P_NODE_14000_length_244_cov_2.584795_g13836_i0 PRJNA886442 14000 244 2.584795 6.3068998 Prymnesium parvum 97485 Haptophyta other_Eukaryota 134 7.640000000000001e-27   NTclustered gi|59894165|gb|AY729865.1| 97485 g13836 i0 81.707 20.4180327868852 164 26 66 4 19 180 506 667 Prymnesium parvum heat shock protein 90 gene, partial cds blastn 4982 134 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
29179316 29179316 PRJNA886442_P_NODE_8769_length_272_cov_1.361809_g8605_i0 PRJNA886442 8769 272 1.361809 3.70412048 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 70.9 1.82e-13   NR XP_005782836.1 280463 g8605 i0 55.7 3.40808823529412 79 31 86 2 5 238 39 114 XP_005782836.1 hypothetical protein EMIHUDRAFT_442529 [Emiliania huxleyi CCMP1516] diamond 927 70.9 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;