RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA886442" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA886442 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30497864 30497864 PRJNA886442_P_NODE_12813_length_247_cov_0.896552_g12649_i0 PRJNA886442 12813 247 0.896552 2.21448344 Patescibacteria group bacterium 2052139 Bacteria Bacteria 48.5 3.75e-4   NR MEK7546453.1 2052139 g12649 i0 37.9 0.704453441295547 58 35 70.4 1 187 14 148 204 MEK7546453.1 Ig-like domain-containing protein [Patescibacteria group bacterium] diamond 174 48.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32426692 32426692 PRJNA886442_P_NODE_7839_length_285_cov_1.103774_g7675_i0 PRJNA886442 7839 285 1.103774 3.1457559 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 46.2 0.00369   NR MCK6554579.1 2838779 g7675 i0 58.3 1.50526315789474 36 15 37.9 0 284 177 625 660 MCK6554579.1 tetratricopeptide repeat protein [Candidatus Binatia bacterium] diamond 429 46.2 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
32773567 32773567 PRJNA886442_P_NODE_11900_length_249_cov_1.318182_g11736_i0 PRJNA886442 11900 249 1.318182 3.28227318 Candidatus Nealsonbacteria bacterium 2093793 Bacteria Bacteria 84.7 6.38e-17   NR NQU20321.1 2093793 g11736 i0 50.6 1.93975903614458 79 39 95.2 0 2 238 304 382 NQU20321.1 N-6 DNA methylase [Candidatus Nealsonbacteria bacterium] diamond 483 84.7 1 Bacteria Bacteria candidate phyla   Candidatus Nealsoniibacteriota         Candidatus Nealsonbacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;