RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA885753" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA885753 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2516923 2516923 PRJNA885753_S_NODE_2742_length_281_cov_2.399038_g2724_i0 PRJNA885753 2742 281 2.399038 6.74129678 Oryza 4527 Plants Plants 520 5.909999999999999e-143   NTclustered gi|815859367|gb|KM036293.1| 4528 g2724 i0 100 109.259786476868 281 0 100 0 1 281 2684 2404 Oryza longistaminata 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 30702 520 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza longistaminata
3793273 3793273 PRJNA885753_S_NODE_1143_length_399_cov_6.061350_g1125_i0 PRJNA885753 1143 399 6.06135 24.1847865 Streptophyta 35493 Plants Plants 726 0   NTclustered gi|30527338|gb|AY095475.1| 3311 g1125 i0 99.5 100.250626566416 400 0 99 1 1 398 1436 1835 Ginkgo biloba 26S ribosomal RNA gene, partial sequence blastn 40000 726 1 Eukaryota Embryophyta Viridiplantae Streptophyta Ginkgoopsida Ginkgoales Ginkgoaceae Ginkgo Ginkgo biloba
3793280 3793280 PRJNA885753_S_NODE_3563_length_254_cov_2.027624_g3545_i0 PRJNA885753 3563 254 2.027624 5.15016496 Sphagnum balticum 128184 Plants Plants 149 2.29e-44   NR CAM6001409.1 128184 g3545 i0 82.1 0.992125984251969 84 15 99.2 0 252 1 46 129 CAM6001409.1 unnamed protein product [Sphagnum balticum] diamond 252 149 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum balticum
8514609 8514609 PRJNA885753_S_NODE_2207_length_306_cov_1.000000_g2189_i0 PRJNA885753 2207 306 1 3.06 Hordeum vulgare 4513 Plants Plants 566 8.239999999999998e-157   NTclustered gi|326497356|dbj|AK371065.1| 112509 g2189 i0 100 1.94117647058824 306 0 100 0 1 306 349 654 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2123O06 blastn 594 566 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Hordeum Hordeum vulgare
12340859 12340859 PRJNA885753_S_NODE_2650_length_285_cov_1.929245_g2632_i0 PRJNA885753 2650 285 1.929245 5.49834825 Cryptomeria japonica 3369 Plants Plants 516 7.77e-142   NTclustered gi|2571297752|ref|XR_009362071.1| 3369 g2632 i0 99.298 100 285 2 100 0 1 285 299 15 PREDICTED: Cryptomeria japonica 28S ribosomal RNA (LOC131863136), rRNA blastn 28500 516 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Cryptomeria Cryptomeria japonica
17439919 17439919 PRJNA885753_S_NODE_3994_length_248_cov_1.782857_g3976_i0 PRJNA885753 3994 248 1.782857 4.42148536 Calluna vulgaris 13385 Plants Plants 56.5 0.002   NTclustered gi|2917566876|emb|OZ228610.1| 13385 g3976 i0 97.059 0.814516129032258 34 0 13 1 125 157 49713335 49713368 Calluna vulgaris genome assembly, chromosome: 7 blastn 202 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ericales Ericaceae Calluna Calluna vulgaris
20367714 20367714 PRJNA885753_S_NODE_2296_length_302_cov_0.908297_g2278_i0 PRJNA885753 2296 302 0.908297 2.7430569400000002 Eukaryota 2759 Plants Plants 553 6.32e-153   NTclustered gi|194703603|gb|BT040881.1| 4577 g2278 i0 99.669 77.3443708609272 302 1 100 0 1 302 791 1092 Zea mays full-length cDNA clone ZM_BFc0144J03 mRNA, complete cds blastn 23358 558 0.991039426523297 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
20367715 20367715 PRJNA885753_S_NODE_2656_length_285_cov_1.650943_g2638_i0 PRJNA885753 2656 285 1.650943 4.70518755 Oryza 4527 Plants Plants 527 3.59e-145   NTclustered gi|780981400|gb|KM117266.1| 4529 g2638 i0 100 108.99298245614 285 0 100 0 1 285 952 668 Oryza rufipogon 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 31063 527 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
21263700 21263700 PRJNA885753_S_NODE_3257_length_263_cov_1.078947_g3239_i0 PRJNA885753 3257 263 1.078947 2.83763061 Tripterygium wilfordii 458696 Plants Plants 75 5.12e-9   NTclustered gi|1954764206|ref|XM_038831111.1| 458696 g3239 i0 89.655 3.77186311787072 58 6 22 0 164 221 629 572 PREDICTED: Tripterygium wilfordii 60S ribosomal protein L9-like (LOC119986525), mRNA blastn 992 75 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Celastrales Celastraceae Tripterygium Tripterygium wilfordii
25468011 25468011 PRJNA885753_S_NODE_2700_length_283_cov_2.100000_g2682_i0 PRJNA885753 2700 283 2.1 5.943 Streptophyta 35493 Plants Plants 472 1.6899999999999998e-128   NTclustered gi|374347430|dbj|AB107898.1| 3371 g2682 i0 100 90.1060070671378 255 0 90 0 29 283 20 274 Metasequoia glyptostroboides gene for 18S ribosomal RNA, complete cds blastn 25500 472 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Metasequoia Metasequoia glyptostroboides
25468019 25468019 PRJNA885753_S_NODE_4340_length_244_cov_2.005848_g4322_i0 PRJNA885753 4340 244 2.005848 4.89426912 Streptophyta 35493 Plants Plants 446 8.639999999999999e-121   NTclustered gi|125662660|gb|EF053174.1| 3371 g4322 i0 99.59 100 244 1 100 0 1 244 598 841 Metasequoia glyptostroboides isolate 110 18S ribosomal RNA gene, partial sequence blastn 24400 446 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Cupressales Cupressaceae Metasequoia Metasequoia glyptostroboides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;