RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA885753" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA885753 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1241317 1241317 PRJNA885753_S_NODE_3321_length_261_cov_1.659574_g3303_i0 PRJNA885753 3321 261 1.659574 4.33148814 Myxococcus 32 Bacteria Bacteria 372 1.61e-98   NTclustered gi|545790938|gb|KF270701.1| 33 g3303 i0 92.424 248.701149425287 264 15 100 5 1 261 237 498 Myxococcus fulvus strain Mxf2 23S ribosomal RNA gene, partial sequence blastn 64911 372 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus
12720872 12720872 PRJNA885753_S_NODE_3210_length_264_cov_1.732984_g3192_i0 PRJNA885753 3210 264 1.732984 4.57507776 Stigmatella 40 Bacteria Bacteria 320 5.99e-83   NTclustered gi|507148216|ref|NR_103023.1| 41 g3192 i0 91.775 224.215909090909 231 17 87 2 22 251 1306 1535 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 59193 320 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;