RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA885753" and tax_kingdom = "Fungi"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Fungi · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA885753 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8514625 8514625 PRJNA885753_S_NODE_3487_length_256_cov_1.491803_g3469_i0 PRJNA885753 3487 256 1.491803 3.81901568 Penicillium ramusculum 449096 Fungi Fungi 468 1.95e-127   NTclustered gi|1804071990|ref|NG_067364.1| 449096 g3469 i0 99.609 99.90625 256 1 100 0 1 256 332 587 Penicillium ramusculum CBS 251.56 28S rRNA gene, partial sequence; from TYPE material blastn 25576 468 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Penicillium Penicillium ramusculum
8894213 8894213 PRJNA885753_S_NODE_2047_length_314_cov_1.668050_g2029_i0 PRJNA885753 2047 314 1.66805 5.237677 Penicillium 5073 Fungi Fungi 579 1.0899999999999999e-160   NTclustered gi|2473854176|gb|OQ729762.1| 5081 g2029 i0 100 99.6783439490446 313 0 99 0 2 314 364 52 Penicillium sp. isolate clinic large subunit ribosomal RNA gene, partial sequence blastn 31299 579 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Penicillium Penicillium sp.
10169937 10169937 PRJNA885753_S_NODE_3588_length_254_cov_1.121547_g3570_i0 PRJNA885753 3588 254 1.121547 2.84872938 Pleosporales 92860 Fungi Fungi 459 1.1599999999999999e-124   NTclustered gi|154563031|gb|EF590321.2| 215456 g3570 i0 99.213 119.799212598425 254 2 100 0 1 254 1411 1664 Phaeosphaeria avenaria f. sp. avenaria strain ATCC 12277 large subunit ribosomal RNA gene, partial sequence blastn 30429 459 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Phaeosphaeriaceae Parastagonospora Parastagonospora avenae
14889691 14889691 PRJNA885753_S_NODE_2392_length_297_cov_1.607143_g2374_i0 PRJNA885753 2392 297 1.607143 4.77321471 Radiomyces spectabilis 64574 Fungi Fungi 71.3 7.62e-8   NTclustered gi|2323760749|ref|XM_051570446.1| 64574 g2374 i0 100 0.498316498316498 38 0 13 0 260 297 542 505 Radiomyces spectabilis 40S ribosomal protein S16 (BYT42DRAFT_590070), mRNA blastn 148 71.3 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Radiomycetaceae Radiomyces Radiomyces spectabilis
25468009 25468009 PRJNA885753_S_NODE_1380_length_368_cov_2.698305_g1362_i0 PRJNA885753 1380 368 2.698305 9.9297624 Aspergillaceae 1131492 Fungi Fungi 647 0   NTclustered gi|2582615798|ref|XR_009468002.1| 5061 g1362 i0 98.37 107.010869565217 368 6 100 0 1 368 1476 1843 Aspergillus niger 28S ribosomal RNA (28S rRNA), partial rRNA blastn 39380 647 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Aspergillus Aspergillus niger

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;