RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

23 rows where bioproject = "PRJNA885753" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Sar · 23 ✖

bioproject 1

  • PRJNA885753 · 23 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5965006 5965006 PRJNA885753_S_NODE_2165_length_307_cov_3.055556_g2147_i0 PRJNA885753 2165 307 3.055556 9.38055692 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 436 6.7699999999999986e-118   NTclustered gi|53829555|gb|AY582830.1| 289359 g2147 i0 99.174 29.5374592833876 242 2 79 0 1 242 997 1238 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 9068 436 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
5965045 5965045 PRJNA885753_S_NODE_4225_length_246_cov_0.901734_g4207_i0 PRJNA885753 4225 246 0.901734 2.21826564 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 134 7.759999999999999e-37   NR KAJ1416936.1 483371 g4207 i0 80.2 7.90243902439024 81 16 98.8 0 2 244 77 157 KAJ1416936.1 P-loop containing nucleoside triphosphate hydrolase protein, partial [Ochromonadaceae sp. CCMP2298] diamond 1944 134 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
7239828 7239828 PRJNA885753_S_NODE_1426_length_364_cov_1.333333_g1408_i0 PRJNA885753 1426 364 1.333333 4.85333212 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 188 3.29e-59   NR KAJ1408443.1 483371 g1408 i0 87.2 0.898351648351648 109 14 89.8 0 363 37 10 118 KAJ1408443.1 ribosomal protein S17e [Ochromonadaceae sp. CCMP2298] diamond 327 188 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
7239830 7239830 PRJNA885753_S_NODE_1546_length_351_cov_1.489209_g1528_i0 PRJNA885753 1546 351 1.489209 5.22712359 Ectocarpus sp. CCAP 131 74372 SAR_Eukaryotes SAR_Eukaryotes 185 1.6899999999999996e-55   NR CAB1117456.1 867726 g1528 i0 78.1 9.58119658119658 114 25 97.4 0 1 342 160 273 CAB1117456.1 unnamed protein product [Ectocarpus sp. CCAP 1310/34] diamond 3363 185 1 Eukaryota Sar     Phaeophyceae Ectocarpales Ectocarpaceae Ectocarpus Ectocarpus sp. CCAP 1310/34
13615339 13615339 PRJNA885753_S_NODE_3411_length_258_cov_1.659459_g3393_i0 PRJNA885753 3411 258 1.659459 4.28140422 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 107 3.81e-27   NR KAJ1436092.1 483371 g3393 i0 84.3 2.61627906976744 70 11 81.4 0 9 218 100 169 KAJ1436092.1 ribosomal protein L19/L19e domain-containing protein [Ochromonadaceae sp. CCMP2298] diamond 675 107 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
13995226 13995226 PRJNA885753_S_NODE_4531_length_242_cov_1.384615_g4513_i0 PRJNA885753 4531 242 1.384615 3.3507683 root 1 Root_unresolved Root_unresolved 133 3.0699999999999997e-37   NR KAH8062557.1 44056 g4513 i0 78.8 3.86776859504132 80 17 99.2 0 1 240 7 86 KAH8062557.1 rRNA binding protein [Aureococcus anophagefferens] diamond 936 133 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Aureococcus Aureococcus anophagefferens
15269275 15269275 PRJNA885753_S_NODE_3272_length_262_cov_1.650794_g3254_i0 PRJNA885753 3272 262 1.650794 4.32508028 Poterioochromonas 88166 SAR_Eukaryotes SAR_Eukaryotes 483 7.149999999999997e-132   NTclustered gi|323690576|gb|GU935635.1| 88167 g3254 i0 100 97.5381679389313 261 0 99 0 2 262 1601 1341 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 25555 483 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
17439863 17439863 PRJNA885753_S_NODE_1274_length_382_cov_2.226537_g1256_i0 PRJNA885753 1274 382 2.226537 8.50537134 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 701 0   NTclustered gi|53829555|gb|AY582830.1| 289359 g1256 i0 99.738 67.303664921466 382 1 100 0 1 382 1038 657 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 25710 701 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
19988333 19988333 PRJNA885753_S_NODE_1196_length_392_cov_2.197492_g1178_i0 PRJNA885753 1196 392 2.197492 8.61416864 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 172 1.21e-51   NR KAJ1408052.1 483371 g1178 i0 65.3 1.75255102040816 121 42 92.6 0 390 28 99 219 KAJ1408052.1 ribosomal protein S4, X-linked X-like protein [Ochromonadaceae sp. CCMP2298] diamond 687 172 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
19988347 19988347 PRJNA885753_S_NODE_2236_length_304_cov_1.580087_g2218_i0 PRJNA885753 2236 304 1.580087 4.80346448 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 195 1.02e-61   NR KAJ1428270.1 483371 g2218 i0 91.1 0.996710526315789 101 9 99.7 0 303 1 44 144 KAJ1428270.1 ribosomal protein L5 domain-containing protein [Ochromonadaceae sp. CCMP2298] diamond 303 195 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
25468017 25468017 PRJNA885753_S_NODE_4080_length_247_cov_1.793103_g4062_i0 PRJNA885753 4080 247 1.793103 4.42896441 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 135 3.16e-39   NR KAJ1401807.1 483371 g4062 i0 98.4 0.777327935222672 64 1 77.7 0 245 54 45 108 KAJ1401807.1 hypothetical protein B484DRAFT_457900 [Ochromonadaceae sp. CCMP2298] diamond 192 135 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
27181689 27181689 PRJNA885753_S_NODE_1982_length_318_cov_2.208163_g1964_i0 PRJNA885753 1982 318 2.208163 7.02195834 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 63.2 3.87e-10   NR KAJ1436105.1 483371 g1964 i0 69.9 0.783018867924528 83 22 78.3 2 318 70 42 121 KAJ1436105.1 hypothetical protein B484DRAFT_477708 [Ochromonadaceae sp. CCMP2298] diamond 249 63.2 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
28161089 28161089 PRJNA885753_S_NODE_3665_length_252_cov_1.709497_g3647_i0 PRJNA885753 3665 252 1.709497 4.30793244 Ectocarpus siliculosus 2880 SAR_Eukaryotes SAR_Eukaryotes 97.1 2.17e-22   NR CBN74803.1 2880 g3647 i0 64.2 0.964285714285714 81 29 96.4 0 4 246 175 255 CBN74803.1 conserved unknown protein [Ectocarpus siliculosus] diamond 243 97.1 1 Eukaryota Sar     Phaeophyceae Ectocarpales Ectocarpaceae Ectocarpus Ectocarpus siliculosus
28318730 28318730 PRJNA885753_S_NODE_1286_length_381_cov_1.389610_g1268_i0 PRJNA885753 1286 381 1.38961 5.2944141 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 105 1.29e-23   NR KAJ1421113.1 483371 g1268 i0 51.3 0.905511811023622 115 56 90.6 0 381 37 489 603 KAJ1421113.1 hypothetical protein B484DRAFT_433346 [Ochromonadaceae sp. CCMP2298] diamond 345 105 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
28886981 28886981 PRJNA885753_S_NODE_2088_length_312_cov_1.280335_g2070_i0 PRJNA885753 2088 312 1.280335 3.9946452 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 146 1.4099999999999999e-42   NR KAJ1442869.1 483371 g2070 i0 74.5 0.980769230769231 102 26 98.1 0 308 3 58 159 KAJ1442869.1 60S ribosomal protein L13a [Ochromonadaceae sp. CCMP2298] diamond 306 146 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
28918469 28918469 PRJNA885753_S_NODE_2188_length_307_cov_0.995726_g2170_i0 PRJNA885753 2188 307 0.995726 3.05687882 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 92.4 3.3800000000000003e-21   NR KAJ1438756.1 483371 g2170 i0 56.5 0.899022801302932 92 38 88.9 2 19 291 1 91 KAJ1438756.1 NAC domain-containing protein, partial [Ochromonadaceae sp. CCMP2298] diamond 276 92.4 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
28950480 28950480 PRJNA885753_S_NODE_3028_length_270_cov_1.421320_g3010_i0 PRJNA885753 3028 270 1.42132 3.837564 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 78.6 1.41e-15   NR KAJ1438084.1 483371 g3010 i0 48 2.22222222222222 100 42 100 2 1 270 89 188 KAJ1438084.1 60S ribosomal protein L13 [Ochromonadaceae sp. CCMP2298] diamond 600 78.6 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
30245201 30245201 PRJNA885753_S_NODE_1852_length_328_cov_1.313725_g1834_i0 PRJNA885753 1852 328 1.313725 4.309018 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 137 4.95e-39   NR KAJ1431703.1 483371 g1834 i0 63.4 0.923780487804878 101 37 92.4 0 311 9 1 101 KAJ1431703.1 ribosomal protein L14-domain-containing protein [Ochromonadaceae sp. CCMP2298] diamond 303 137 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
30687261 30687261 PRJNA885753_S_NODE_1673_length_341_cov_1.123134_g1655_i0 PRJNA885753 1673 341 1.123134 3.82988694 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 74.3 2.63e-14   NR KAJ1394621.1 483371 g1655 i0 57.1 0.6158357771261 70 25 61.6 2 340 131 65 129 KAJ1394621.1 40S ribosomal protein S10 [Ochromonadaceae sp. CCMP2298] diamond 210 74.3 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
31287622 31287622 PRJNA885753_S_NODE_1135_length_400_cov_3.626911_g1117_i0 PRJNA885753 1135 400 3.626911 14.507644 Symbiodinium microadriaticum 2951 SAR_Eukaryotes SAR_Eukaryotes 127 3.3e-35   NR CAE7851833.1 2951 g1117 i0 80 1.1925 80 16 60 0 400 161 9 88 CAE7851833.1 RPS27A, partial [Symbiodinium microadriaticum] diamond 477 127 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium microadriaticum
31951941 31951941 PRJNA885753_S_NODE_2217_length_305_cov_1.344828_g2199_i0 PRJNA885753 2217 305 1.344828 4.1017254 Ochromonadaceae sp. CCMP2298 483371 SAR_Eukaryotes SAR_Eukaryotes 168 7.43e-52   NR KAJ1429069.1 483371 g2199 i0 84.5 0.954098360655738 97 15 95.4 0 13 303 1 97 KAJ1429069.1 ribosomal protein S26e [Ochromonadaceae sp. CCMP2298] diamond 291 168 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae   Ochromonadaceae sp. CCMP2298
31991488 31991488 PRJNA885753_S_NODE_4418_length_243_cov_1.835294_g4400_i0 PRJNA885753 4418 243 1.835294 4.45976442 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 100 3.07e-25   NR CAE7554797.1 2951 g4400 i0 69.2 6.11111111111111 78 22 93.8 2 229 2 1 78 CAE7554797.1 RPL31 [Symbiodinium microadriaticum] diamond 1485 100 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium microadriaticum
32553503 32553503 PRJNA885753_S_NODE_2239_length_304_cov_1.350649_g2221_i0 PRJNA885753 2239 304 1.350649 4.10597296 Symbiodinium microadriaticum 2951 SAR_Eukaryotes SAR_Eukaryotes 123 9.24e-33   NR CAE7473169.1 2951 g2221 i0 71.8 0.838815789473684 85 24 83.9 0 303 49 120 204 CAE7473169.1 RPS8 [Symbiodinium microadriaticum] diamond 255 123 1 Eukaryota Sar     Dinophyceae Suessiales Symbiodiniaceae Symbiodinium Symbiodinium microadriaticum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;