RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA885753" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA885753 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28192226 28192226 PRJNA885753_S_NODE_4026_length_248_cov_0.891429_g4008_i0 PRJNA885753 4026 248 0.891429 2.21074392 Opitutia bacterium 2026771 Bacteria Bacteria 164 2.04e-48   NR NCC94400.1 2026771 g4008 i0 98.8 0.991935483870968 82 1 99.2 0 1 246 209 290 NCC94400.1 hypothetical protein [Opitutia bacterium] diamond 246 164 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
31043171 31043171 PRJNA885753_S_NODE_3775_length_251_cov_0.876404_g3757_i0 PRJNA885753 3775 251 0.876404 2.19977404 Pseudomonadati 3379134 Bacteria Bacteria 164 3.36e-45   NR NCC91808.1 2026771 g3757 i0 100 1.9840637450199201 83 0 99.2 0 1 249 223 305 NCC91808.1 outer membrane protein assembly factor BamA [Opitutia bacterium] diamond 498 164 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;