RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA884104" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA884104 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22538288 22538288 PRJNA884104_S_NODE_78458_length_245_cov_1.354651_g77715_i0 PRJNA884104 78458 245 1.354651 3.31889495 Bacteria 2 Bacteria Bacteria 99 6.27e-22   NR WP_218830612.1 1196024 g77715 i0 56.8 18.8081632653061 81 35 99.2 0 243 1 564 644 WP_218830612.1 copper-translocating P-type ATPase [Rubrivirga marina] diamond 4608 99 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina
26865872 26865872 PRJNA884104_S_NODE_42681_length_318_cov_1.118367_g41938_i0 PRJNA884104 42681 318 1.1183670000000001 3.55640706 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 118 2.1e-28   NR WP_412067386.1 3391575 g41938 i0 55.5 1.0377358490566 110 42 97.2 1 309 1 108 217 WP_412067386.1 M20/M25/M40 family metallo-hydrolase [Rubrivirga sp. IMCC43871] diamond 330 118 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
27782139 27782139 PRJNA884104_S_NODE_71744_length_249_cov_1.312500_g71001_i0 PRJNA884104 71744 249 1.3125 3.268125 Longimonas sp. 2039626 Bacteria Bacteria 90.1 1.09e-20   NR WP_353563132.1 2039626 g71001 i0 74.2 1.49397590361446 62 16 74.7 0 186 1 5 66 WP_353563132.1 nucleoside deaminase [Longimonas sp.] diamond 372 90.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longimonas Longimonas sp.
31604119 31604119 PRJNA884104_S_NODE_9736_length_648_cov_1.398261_g9027_i0 PRJNA884104 9736 648 1.398261 9.06073128 Rhodothermales bacterium 2306054 Bacteria Bacteria 267 1.26e-84   NR MFT4606032.1 2306054 g9027 i0 59.8 5.94444444444444 214 86 99.1 0 6 647 100 313 MFT4606032.1 4-hydroxybutyrate CoA-transferase [Rhodothermales bacterium] diamond 3852 267 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;