RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA884104" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA884104 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14889291 14889291 PRJNA884104_S_NODE_68812_length_251_cov_0.865169_g68069_i0 PRJNA884104 68812 251 0.865169 2.17157419 Bacteria candidate phyla 1783234 Bacteria Bacteria 126 1.4199999999999998e-31   NR WP_013887393.1 2352 g68069 i0 78.3 130.721115537849 83 18 99.2 0 1 249 370 452 WP_013887393.1 molecular chaperone DnaK [Flexistipes sinusarabici] diamond 32811 127 0.992125984251969 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Flexistipitaceae Flexistipes Flexistipes sinusarabici
26834009 26834009 PRJNA884104_S_NODE_53321_length_286_cov_2.741784_g52578_i0 PRJNA884104 53321 286 2.741784 7.84150224 Deferribacterota bacterium 3031947 Bacteria Bacteria 59.7 6.04e-8   NR MDY6821420.1 3031947 g52578 i0 44.9 0.723776223776224 69 38 72.4 0 75 281 273 341 MDY6821420.1 prephenate dehydratase [Deferribacterota bacterium] diamond 207 59.7 1 Bacteria   Pseudomonadati Deferribacterota         Deferribacterota bacterium
29392383 29392383 PRJNA884104_S_NODE_86789_length_241_cov_0.898810_g86046_i0 PRJNA884104 86789 241 0.89881 2.1661321 Limisalsivibrio acetivorans 1304888 Bacteria Bacteria 77 3e-14   NR WP_022850329.1 1304888 g86046 i0 54.3 0.871369294605809 70 31 87.1 1 21 230 856 924 WP_022850329.1 response regulator [Limisalsivibrio acetivorans] diamond 210 77 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Limisalsivibrio Limisalsivibrio acetivorans
30560700 30560700 PRJNA884104_S_NODE_17513_length_481_cov_1.718137_g16773_i0 PRJNA884104 17513 481 1.718137 8.26423897 Deferribacterota bacterium 3031947 Bacteria Bacteria 62.8 3.8e-8   NR MDY6821420.1 3031947 g16773 i0 46.5 0.442827442827443 71 38 44.3 0 245 457 273 343 MDY6821420.1 prephenate dehydratase [Deferribacterota bacterium] diamond 213 62.8 1 Bacteria   Pseudomonadati Deferribacterota         Deferribacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;