RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA884104", tax_phylum = "Candidatus Poribacteria" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Candidatus Poribacteria · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA884104 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5963749 5963749 PRJNA884104_S_NODE_27005_length_391_cov_1.534591_g26262_i0 PRJNA884104 27005 391 1.534591 6.00025081 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 75 7.98e-9   NTclustered gi|2893358452|emb|OZ220744.1| 2026781 g26262 i0 90.909 0.140664961636829 55 5 14 0 95 149 6194080 6194134 MAG: Candidatus Poribacteria bacterium isolate 67f587a8-c379-43ee-8694-439c00dbce40 genome assembly, chromosome: 1 blastn 55 75 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
26714795 26714795 PRJNA884104_S_NODE_87821_length_227_cov_3.000000_g87078_i0 PRJNA884104 87821 227 3 6.81 Bacteria 2 Bacteria Bacteria 56.6 3.65e-7   NR MCZ6676065.1 2026781 g87078 i0 44.6 3.27753303964758 65 34 85.9 1 221 27 13 75 MCZ6676065.1 ornithine cyclodeaminase family protein [Candidatus Poribacteria bacterium] diamond 744 56.6 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium
30845358 30845358 PRJNA884104_S_NODE_16414_length_496_cov_2.014184_g15676_i0 PRJNA884104 16414 496 2.014184 9.99035264 Candidatus Poribacteria bacterium 2026781 Bacteria Bacteria 49.3 0.0024   NR RKU26374.1 2026781 g15676 i0 29.5 0.780241935483871 129 80 75 4 464 93 82 204 RKU26374.1 MAG: hypothetical protein C6495_17225 [Candidatus Poribacteria bacterium] diamond 387 49.3 1 Bacteria Bacteria candidate phyla   Candidatus Poribacteria         Candidatus Poribacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;