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contig_metadata

31 rows where bioproject = "PRJNA884104" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 31 ✖

tax_kingdom 1

bioproject 1

  • PRJNA884104 · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3412401 3412401 PRJNA884104_S_NODE_85823_length_241_cov_0.916667_g85080_i0 PRJNA884104 85823 241 0.916667 2.20916747 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 135 2.55e-36   NR PZQ45437.1 349221 g85080 i0 82.5 0.995850622406639 80 14 99.6 0 240 1 262 341 PZQ45437.1 MAG: undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase [Micavibrio aeruginosavorus] diamond 240 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
5964896 5964896 PRJNA884104_S_NODE_84525_length_242_cov_0.911243_g83782_i0 PRJNA884104 84525 242 0.911243 2.20520806 Bdellovibrio sp. HAGR004 3113895 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2663432256|dbj|AP029176.1| 3113895 g83782 i0 100 1 242 0 100 0 1 242 1655042 1654801 Bdellovibrio sp. HAGR004 DNA, complete genome blastn 242 448 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HAGR004
21263388 21263388 PRJNA884104_S_NODE_74677_length_248_cov_0.880000_g73934_i0 PRJNA884104 74677 248 0.88 2.1824 Peredibacter starrii 28202 Bacteria Bacteria 202 2.0999999999999998e-47   NTclustered gi|2631252187|gb|CP139487.1| 28202 g73934 i0 85 1.61693548387097 200 29 81 1 46 245 2687293 2687095 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 401 202 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21643439 21643439 PRJNA884104_S_NODE_49157_length_298_cov_1.382222_g48414_i0 PRJNA884104 49157 298 1.382222 4.11902156 Bacteriovorax 146784 Bacteria Bacteria 496 1.06e-135   NTclustered gi|34604517|gb|AY294220.1| 242934 g48414 i0 96.644 91.8087248322148 298 10 100 0 1 298 452 155 Bacteriovorax sp. EPA 16S ribosomal RNA gene, partial sequence blastn 27359 496 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. EPA
22918934 22918934 PRJNA884104_S_NODE_86238_length_241_cov_0.916667_g85495_i0 PRJNA884104 86238 241 0.916667 2.20916747 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 139 2.48e-38   NR MBS1983377.1 2053517 g85495 i0 88.8 0.995850622406639 80 9 99.6 0 241 2 167 246 MBS1983377.1 malate dehydrogenase [Bdellovibrionales bacterium] diamond 240 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27087142 27087142 PRJNA884104_S_NODE_82362_length_243_cov_0.905882_g81619_i0 PRJNA884104 82362 243 0.905882 2.20129326 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 117 1.03e-30   NR MFL5783816.1 2081706 g81619 i0 72.5 1.96296296296296 80 22 98.8 0 242 3 55 134 MFL5783816.1 hypothetical protein [Bacteriovoracaceae bacterium] diamond 477 117 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
27529346 27529346 PRJNA884104_S_NODE_30203_length_371_cov_1.701342_g29460_i0 PRJNA884104 30203 371 1.701342 6.31197882 Bacteriovorax sp. 2608087 Bacteria Bacteria 79 3.27e-15   NR MBP9680184.1 2608087 g29460 i0 48.1 0.873315363881402 108 53 85.7 3 361 44 49 155 MBP9680184.1 hypothetical protein [Bacteriovorax sp.] diamond 324 79 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
27624307 27624307 PRJNA884104_S_NODE_74224_length_248_cov_0.880000_g73481_i0 PRJNA884104 74224 248 0.88 2.1824 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 146 9.829999999999997e-42   NR MES2527920.1 3034175 g73481 i0 85.4 2.9758064516129 82 12 99.2 0 247 2 137 218 MES2527920.1 TatD family hydrolase [Bdellovibrionota bacterium] diamond 738 146 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27782144 27782144 PRJNA884104_S_NODE_79884_length_245_cov_0.895349_g79141_i0 PRJNA884104 79884 245 0.895349 2.19360505 Bacteriovorax sp. BAL6_X 1201290 Bacteria Bacteria 58.2 1.37e-7   NR WP_021268018.1 1201290 g79141 i0 45.7 1.62857142857143 70 36 85.7 1 35 244 198 265 WP_021268018.1 ankyrin repeat domain-containing protein [Bacteriovorax sp. BAL6_X] diamond 399 58.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. BAL6_X
27844965 27844965 PRJNA884104_S_NODE_67844_length_252_cov_1.290503_g67101_i0 PRJNA884104 67844 252 1.290503 3.25206756 Oligoflexia bacterium 2599941 Bacteria Bacteria 55.5 1.25e-6   NR MDR3607129.1 2599941 g67101 i0 46.6 0.869047619047619 73 31 86.9 2 33 251 7 71 MDR3607129.1 GDP-mannose 4,6-dehydratase [Oligoflexia bacterium] diamond 219 55.5 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
28855303 28855303 PRJNA884104_S_NODE_5748_length_846_cov_2.288486_g5164_i0 PRJNA884104 5748 846 2.288486 19.36059156 Micavibrio sp. 2024841 Bacteria Bacteria 49.7 0.0127   NR MDB5492358.1 2024841 g5164 i0 42.7 0.290780141843972 82 45 28.7 2 370 612 1 81 MDB5492358.1 hep Hag family protein [Micavibrio sp.] diamond 246 49.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
28894829 28894829 PRJNA884104_S_NODE_33988_length_352_cov_1.103943_g33245_i0 PRJNA884104 33988 352 1.103943 3.88587936 Bacteria 2 Bacteria Bacteria 87 2.23e-17   NR MEZ0391510.1 2026715 g33245 i0 85.2 3.28125 54 8 46 0 347 186 334 387 MEZ0391510.1 cystathionine gamma-synthase [Pseudobdellovibrionaceae bacterium] diamond 1155 87 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29076656 29076656 PRJNA884104_S_NODE_55028_length_282_cov_1.258373_g54285_i0 PRJNA884104 55028 282 1.258373 3.54861186 Bacteriovorax sp. Seq25_V 1201288 Bacteria Bacteria 57.4 4.31e-7   NR WP_021273525.1 1201288 g54285 i0 35.2 0.968085106382979 91 45 96.8 1 282 10 664 740 WP_021273525.1 CHASE domain-containing protein [Bacteriovorax sp. Seq25_V] diamond 273 57.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. Seq25_V
29147930 29147930 PRJNA884104_S_NODE_47689_length_302_cov_2.384279_g46946_i0 PRJNA884104 47689 302 2.384279 7.20052258 root 1 Root_unresolved Root_unresolved 47 0.00242   NR MAE58781.1 2020862 g46946 i0 32.9 1.55960264900662 76 39 67.5 2 297 94 307 378 MAE58781.1 hypothetical protein [Halobacteriovorax sp.] diamond 471 47 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Halobacteriovoraceae Halobacteriovorax Halobacteriovorax sp.
29265795 29265795 PRJNA884104_S_NODE_82209_length_243_cov_0.905882_g81466_i0 PRJNA884104 82209 243 0.905882 2.20129326 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 53.5 5.39e-6   NR MEE2742648.1 3034175 g81466 i0 57.1 0.518518518518518 42 15 51.9 1 77 202 21 59 MEE2742648.1 phosphatidylinositol-specific phospholipase C domain-containing protein [Bdellovibrionota bacterium] diamond 126 53.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29329035 29329035 PRJNA884104_S_NODE_41409_length_322_cov_1.236948_g40666_i0 PRJNA884104 41409 322 1.236948 3.98297256 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 121 1.19e-33   NR MBX9703509.1 2654442 g40666 i0 85.3 0.633540372670807 68 10 63.4 0 320 117 7 74 MBX9703509.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 204 121 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
29392355 29392355 PRJNA884104_S_NODE_57329_length_276_cov_1.517241_g56586_i0 PRJNA884104 57329 276 1.517241 4.18758516 Micavibrio sp. 2024841 Bacteria Bacteria 83.2 2.29e-16   NR MFA5591951.1 2024841 g56586 i0 49.4 2.40217391304348 77 39 83.7 0 236 6 2 78 MFA5591951.1 acyl-CoA dehydrogenase [Micavibrio sp.] diamond 663 83.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio sp.
29423612 29423612 PRJNA884104_S_NODE_57049_length_277_cov_1.132353_g56306_i0 PRJNA884104 57049 277 1.132353 3.13661781 Bdellovibrionales bacterium RIFOXYC1_FULL_54_43 1797397 Bacteria Bacteria 69.3 1.94e-11   NR OFZ56286.1 1797397 g56306 i0 41.3 3.89891696750903 92 52 99.6 2 1 276 185 274 OFZ56286.1 MAG: alcohol dehydrogenase [Bdellovibrionales bacterium RIFOXYC1_FULL_54_43] diamond 1080 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium RIFOXYC1_FULL_54_43
29802632 29802632 PRJNA884104_S_NODE_39711_length_328_cov_1.254902_g38968_i0 PRJNA884104 39711 328 1.254902 4.11607856 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 45.4 0.0113   NR MCB0348069.1 2053517 g38968 i0 48 0.457317073170732 50 23 45.7 1 162 311 409 455 MCB0348069.1 PKD domain-containing protein [Bdellovibrionales bacterium] diamond 150 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30181751 30181751 PRJNA884104_S_NODE_78692_length_245_cov_1.116279_g77949_i0 PRJNA884104 78692 245 1.116279 2.73488355 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 51.6 2.71e-5   NR MFN8790750.1 2053517 g77949 i0 39.5 1.0530612244898 86 47 99.2 1 245 3 131 216 MFN8790750.1 site-specific integrase [Bdellovibrionales bacterium] diamond 258 51.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30221204 30221204 PRJNA884104_S_NODE_75692_length_247_cov_0.885057_g74949_i0 PRJNA884104 75692 247 0.885057 2.18609079 Bacteriovorax 146784 Bacteria Bacteria 132 7.209999999999999e-38   NR WP_102242072.1 960 g74949 i0 88.9 2.62348178137652 72 8 87.4 0 3 218 36 107 WP_102242072.1 thioredoxin [Bacteriovorax stolpii] diamond 648 132 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
30434874 30434874 PRJNA884104_S_NODE_35093_length_347_cov_1.018248_g34350_i0 PRJNA884104 35093 347 1.018248 3.53332056 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 53.9 8.99e-6   NR MBS1961696.1 2053517 g34350 i0 36.6 1.93659942363112 112 58 96.8 4 336 1 114 212 MBS1961696.1 hypothetical protein [Bdellovibrionales bacterium] diamond 672 53.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30655649 30655649 PRJNA884104_S_NODE_29333_length_376_cov_1.524752_g28590_i0 PRJNA884104 29333 376 1.524752 5.73306752 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 75.5 8.82e-14   NR MBS1959996.1 2053517 g28590 i0 33.1 1.875 118 71 94.1 2 372 19 104 213 MBS1959996.1 hypothetical protein [Bdellovibrionales bacterium] diamond 705 75.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30813686 30813686 PRJNA884104_S_NODE_67474_length_253_cov_1.127778_g66731_i0 PRJNA884104 67474 253 1.127778 2.85327834 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 55.5 1.33e-6   NR MCY4321488.1 2026715 g66731 i0 38.1 1.49407114624506 63 39 74.7 0 196 8 266 328 MCY4321488.1 ankyrin repeat domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 378 55.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31035205 31035205 PRJNA884104_S_NODE_72535_length_249_cov_0.875000_g71792_i0 PRJNA884104 72535 249 0.875 2.17875 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 44.3 0.00978   NR HXH32128.1 2081706 g71792 i0 36 0.903614457831325 75 40 90.4 1 238 14 49 115 HXH32128.1 CAP domain-containing protein [Bacteriovoracaceae bacterium] diamond 225 44.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31445925 31445925 PRJNA884104_S_NODE_83676_length_242_cov_1.366864_g82933_i0 PRJNA884104 83676 242 1.366864 3.30781088 Bdellovibrio sp. 28201 Bacteria Bacteria 82.4 4.18e-17   NR MBI4925713.1 28201 g82933 i0 49.4 2.91322314049587 77 39 95.5 0 8 238 58 134 MBI4925713.1 isoprenoid biosynthesis glyoxalase ElbB [Bdellovibrio sp.] diamond 705 83.2 0.990384615384615 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
31572566 31572566 PRJNA884104_S_NODE_20576_length_445_cov_1.521505_g19833_i0 PRJNA884104 20576 445 1.521505 6.7706972499999996 Bacteriovorax sp. Seq25_V 1201288 Bacteria Bacteria 121 1.2399999999999999e-28   NR WP_021272991.1 1201288 g19833 i0 48.9 1.82022471910112 137 64 92.4 1 412 2 16 146 WP_021272991.1 ribonucleoside-diphosphate reductase subunit alpha [Bacteriovorax sp. Seq25_V] diamond 810 121 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. Seq25_V
31698968 31698968 PRJNA884104_S_NODE_70917_length_250_cov_0.870056_g70174_i0 PRJNA884104 70917 250 0.870056 2.17514 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 92.4 8.39e-20   NR MBS1984860.1 2053517 g70174 i0 58.1 1.032 86 33 99.6 1 249 1 279 364 MBS1984860.1 beta-ketoacyl-[acyl-carrier-protein] synthase family protein [Bdellovibrionales bacterium] diamond 258 92.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32086473 32086473 PRJNA884104_S_NODE_72498_length_249_cov_0.875000_g71755_i0 PRJNA884104 72498 249 0.875 2.17875 Bdellovibrio 958 Bacteria Bacteria 84 1.27e-16   NR WP_262554990.1 959 g71755 i0 46.8 5.57831325301205 77 41 92.8 0 10 240 224 300 WP_262554990.1 hypothetical protein [Bdellovibrio bacteriovorus] diamond 1389 84.3 0.99644128113879 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
32268571 32268571 PRJNA884104_S_NODE_4778_length_927_cov_4.689696_g4241_i0 PRJNA884104 4778 927 4.689696 43.47348192 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 375 4.78e-129   NR MBX9767865.1 2053517 g4241 i0 90.5 0.650485436893204 201 19 65 0 674 72 1 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 603 375 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32899441 32899441 PRJNA884104_S_NODE_61140_length_267_cov_1.190722_g60397_i0 PRJNA884104 61140 267 1.190722 3.17922774 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 115 4.13e-29   NR MBQ49542.1 2026715 g60397 i0 60.7 0.943820224719101 84 33 94.4 0 253 2 47 130 MBQ49542.1 class II glutamine amidotransferase [Pseudobdellovibrionaceae bacterium] diamond 252 115 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;