RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA884104", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA884104 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23813872 23813872 PRJNA884104_S_NODE_87719_length_228_cov_8.625806_g86976_i0 PRJNA884104 87719 228 8.625806 19.66683768 Leptotrichia sp. SK-5 3075818 Bacteria Bacteria 52.8 0.02   NTclustered gi|2899356158|dbj|AP028931.1| 3075818 g86976 i0 94.118 0.149122807017544 34 2 15 0 136 169 1247371 1247404 Leptotrichia sp. SK-5 DNA, complete genome blastn 34 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. SK-5
30655674 30655674 PRJNA884104_S_NODE_62293_length_264_cov_1.994764_g61550_i0 PRJNA884104 62293 264 1.994764 5.26617696 Sebaldella termitidis 826 Bacteria Bacteria 42.4 0.0494   NR WP_012861599.1 826 g61550 i0 40 0.625 55 26 62.5 1 1 165 89 136 WP_012861599.1 hypothetical protein [Sebaldella termitidis] diamond 165 42.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sebaldella Sebaldella termitidis
31667223 31667223 PRJNA884104_S_NODE_81317_length_244_cov_0.900585_g80574_i0 PRJNA884104 81317 244 0.900585 2.1974274 Fusobacterium hwasookii 1583098 Bacteria Bacteria 100 1.6499999999999995e-23   NR WP_005916783.1 1583098 g80574 i0 90.6 0.651639344262295 53 5 65.2 0 2 160 237 289 WP_005916783.1 RluA family pseudouridine synthase [Fusobacterium hwasookii] diamond 159 100 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium hwasookii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;