RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA884104", tax_clade = "Nitrospinota/Tectimicrobiota group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 6 ✖

tax_kingdom 1

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 6 ✖

bioproject 1

  • PRJNA884104 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2516915 2516915 PRJNA884104_S_NODE_85262_length_241_cov_1.726190_g84519_i0 PRJNA884104 85262 241 1.72619 4.1601179 Bacteria 2 Bacteria Bacteria 145 2.21e-39   NR MDH5511335.1 2026769 g84519 i0 83.8 6.82157676348548 80 13 99.6 0 1 240 78 157 MDH5511335.1 adenosylhomocysteinase [Nitrospinota bacterium] diamond 1644 146 0.993150684931507 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
27411273 27411273 PRJNA884104_S_NODE_49503_length_297_cov_1.455357_g48760_i0 PRJNA884104 49503 297 1.455357 4.32241029 Bacteria 2 Bacteria Bacteria 55.1 1.17e-7   NR KMP10525.1 1628278 g48760 i0 40.6 8.77777777777778 64 36 64.6 1 18 209 4 65 KMP10525.1 cold-shock protein [Candidatus Nitromaritima sp. SCGC AAA799-A02] diamond 2607 55.5 0.992792792792793 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitromaritima Candidatus Nitromaritima sp. SCGC AAA799-A02
28421582 28421582 PRJNA884104_S_NODE_74686_length_248_cov_0.880000_g73943_i0 PRJNA884104 74686 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 115 5.2899999999999995e-30   NR ETW93639.1 1429438 g73943 i0 64.6 6.78629032258065 79 28 95.6 0 3 239 82 160 ETW93639.1 MAG: LOG family protein PA4923 [Candidatus Entotheonella factor] diamond 1683 115 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Candidatus Tectimicrobiota Candidatus Entotheonellia Candidatus Entotheonellales Candidatus Entotheonellaceae Candidatus Entotheonella Candidatus Entotheonella factor
29045066 29045066 PRJNA884104_S_NODE_29728_length_374_cov_1.089701_g28985_i0 PRJNA884104 29728 374 1.089701 4.07548174 Nitrospinota bacterium 2026769 Bacteria Bacteria 45.8 0.011   NR HJP17338.1 2026769 g28985 i0 35.1 1.14705882352941 74 46 59.4 1 104 325 71 142 HJP17338.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Nitrospinota bacterium] diamond 429 45.8 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
29865885 29865885 PRJNA884104_S_NODE_54051_length_285_cov_0.797170_g53308_i0 PRJNA884104 54051 285 0.79717 2.2719345 Nitrospinaceae bacterium 2358456 Bacteria Bacteria 41.2 0.0337   NR MDE0848133.1 2358456 g53308 i0 56.7 0.315789473684211 30 13 31.6 0 280 191 47 76 MDE0848133.1 response regulator [Nitrospinaceae bacterium] diamond 90 41.2 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae   Nitrospinaceae bacterium
31698979 31698979 PRJNA884104_S_NODE_84997_length_242_cov_0.911243_g84254_i0 PRJNA884104 84997 242 0.911243 2.20520806 Candidatus Tectimicrobiota bacterium 2528274 Bacteria Bacteria 45.1 0.00108   NR HXH81442.1 2528274 g84254 i0 46.3 4.79752066115702 67 31 76.9 2 242 57 20 86 HXH81442.1 RNA-binding protein [Candidatus Tectimicrobiota bacterium] diamond 1161 45.1 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Candidatus Tectimicrobiota         Candidatus Tectimicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;