RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA884104", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 10 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 10 ✖

bioproject 1

  • PRJNA884104 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
860604 860604 PRJNA884104_S_NODE_32001_length_362_cov_1.065744_g31258_i0 PRJNA884104 32001 362 1.065744 3.85799328 Methanobrevibacter sp. UBA188 1915473 Archaea Archaea 155 5.11e-41   NR WP_292883709.1 1915473 g31258 i0 60.8 2.98342541436464 120 47 99.4 0 362 3 652 771 WP_292883709.1 ThiF family adenylyltransferase, partial [Methanobrevibacter sp. UBA188] diamond 1080 155 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. UBA188
1241211 1241211 PRJNA884104_S_NODE_4241_length_980_cov_1.692393_g3736_i0 PRJNA884104 4241 980 1.692393 16.5854514 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 425 1.34e-139   NR WP_295614768.1 253161 g3736 i0 61 1.99591836734694 326 127 99.8 0 980 3 485 810 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 1956 425 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
7239141 7239141 PRJNA884104_S_NODE_52366_length_289_cov_1.425926_g51623_i0 PRJNA884104 52366 289 1.425926 4.12092614 Methanobrevibacter sp. 66852 Archaea Archaea 179 5.57e-50   NR WP_405277409.1 66852 g51623 i0 87.5 0.996539792387543 96 12 99.7 0 288 1 195 290 WP_405277409.1 AAA family ATPase [Methanobrevibacter sp.] diamond 288 179 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
22918926 22918926 PRJNA884104_S_NODE_84578_length_242_cov_0.911243_g83835_i0 PRJNA884104 84578 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 107 1.33e-25   NR WP_040681635.1 1348249 g83835 i0 62.5 4.78512396694215 80 30 99.2 0 240 1 182 261 WP_040681635.1 cysteine desulfurase NifS [Methanobrevibacter boviskoreani] diamond 1158 107 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter boviskoreani
26738456 26738456 PRJNA884104_S_NODE_44021_length_313_cov_2.537500_g43278_i0 PRJNA884104 44021 313 2.5375 7.942375 Methanobrevibacter sp. 66852 Archaea Archaea 60.8 3.51e-8   NR MEE3443986.1 66852 g43278 i0 36.2 0.900958466453674 94 54 90.1 2 287 6 205 292 MEE3443986.1 hypothetical protein [Methanobrevibacter sp.] diamond 282 60.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
27719251 27719251 PRJNA884104_S_NODE_17644_length_479_cov_2.369458_g16904_i0 PRJNA884104 17644 479 2.369458 11.34970382 Methanobrevibacter sp. 66852 Archaea Archaea 130 2.21e-35   NR MEE3444538.1 66852 g16904 i0 41.8 0.989561586638831 158 91 98.3 1 4 474 3 160 MEE3444538.1 40S ribosomal protein S19 [Methanobrevibacter sp.] diamond 474 130 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
28445211 28445211 PRJNA884104_S_NODE_7706_length_729_cov_2.576220_g7032_i0 PRJNA884104 7706 729 2.57622 18.7806438 Methanobrevibacter sp. 66852 Archaea Archaea 184 1.04e-52   NR WP_292806969.1 66852 g7032 i0 40.6 1.02469135802469 249 136 97.9 2 728 15 12 259 WP_292806969.1 WD40 repeat domain-containing protein [Methanobrevibacter sp.] diamond 747 184 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30948216 30948216 PRJNA884104_S_NODE_23354_length_419_cov_1.335260_g22611_i0 PRJNA884104 23354 419 1.33526 5.5947394 root 1 Root_unresolved Root_unresolved 53.1 6.13e-5   NR WP_407411287.1 66852 g22611 i0 38 2.91408114558473 100 49 65.2 4 417 145 190 285 WP_407411287.1 C1 family peptidase [Methanobrevibacter sp.] diamond 1221 53.5 0.992523364485981 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31572598 31572598 PRJNA884104_S_NODE_7096_length_760_cov_3.457060_g6447_i0 PRJNA884104 7096 760 3.45706 26.273656 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 47.4 0.0442   NR WP_296809049.1 253161 g6447 i0 26.8 0.911842105263158 231 120 87.2 10 733 71 173 364 WP_296809049.1 hypothetical protein, partial [uncultured Methanobrevibacter sp.] diamond 693 47.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32844428 32844428 PRJNA884104_S_NODE_23940_length_414_cov_1.158358_g23197_i0 PRJNA884104 23940 414 1.158358 4.79560212 root 1 Root_unresolved Root_unresolved 52 1.43e-4   NR MBQ2635274.1 66852 g23197 i0 30 2.90579710144928 120 79 83.3 2 365 21 198 317 MBQ2635274.1 hypothetical protein [Methanobrevibacter sp.] diamond 1203 52 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;