RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA884104", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA884104 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13614192 13614192 PRJNA884104_S_NODE_33571_length_354_cov_1.096085_g32828_i0 PRJNA884104 33571 354 1.096085 3.8801409 Amoeba proteus 5775 Tubulinea other_Eukaryota 427 4.76e-115   NTclustered gi|844573744|gb|KP411223.1| 5775 g32828 i0 88.515 1.00847457627119 357 36 99 3 1 353 22 377 Amoeba proteus Tom40 mRNA, complete cds blastn 357 427 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
24192747 24192747 PRJNA884104_S_NODE_43759_length_314_cov_1.867220_g43016_i0 PRJNA884104 43759 314 1.86722 5.8630708 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 322 2.03e-83   NTclustered gi|167859735|gb|EU273448.1| 498005 g43016 i0 85.35 97.7898089171974 314 43 99 3 1 312 279 591 Nolandella sp. ATCC 50913 alpha-tubulin gene, partial cds blastn 30706 322 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. ATCC 50913
29202941 29202941 PRJNA884104_S_NODE_35449_length_345_cov_1.698529_g34706_i0 PRJNA884104 35449 345 1.698529 5.85992505 Amoeba proteus 5775 Tubulinea other_Eukaryota 57.4 6.42e-7   NR AKN09692.1 5775 g34706 i0 28.9 0.991304347826087 114 79 99.1 2 344 3 4 115 AKN09692.1 Tom40 [Amoeba proteus] diamond 342 57.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32395080 32395080 PRJNA884104_S_NODE_30199_length_371_cov_1.781879_g29456_i0 PRJNA884104 30199 371 1.781879 6.61077109 Amoeba proteus 5775 Tubulinea other_Eukaryota 85.5 3.7e-17   NR AKN09692.1 5775 g29456 i0 39.3 0.905660377358491 112 67 90.6 1 1 336 173 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 336 85.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;