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contig_metadata

16 rows where bioproject = "PRJNA883229" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA883229 · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4688441 4688441 PRJNA883229_P_NODE_9324_length_252_cov_0.871508_g9278_i0 PRJNA883229 9324 252 0.871508 2.19620016 Myxococcota bacterium 2818507 Bacteria Bacteria 138 4.83e-36   NR MBP7125133.1 2818507 g9278 i0 68.7 0.988095238095238 83 26 98.8 0 1 249 484 566 MBP7125133.1 hypothetical protein [Myxococcota bacterium] diamond 249 138 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
7238061 7238061 PRJNA883229_P_NODE_13006_length_247_cov_0.896552_g12960_i0 PRJNA883229 13006 247 0.896552 2.21448344 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 116 5.790000000000001e-29   NR MBL8786215.1 2026735 g12960 i0 70.7 0.995951417004049 82 24 99.6 0 246 1 109 190 MBL8786215.1 ADP-forming succinate--CoA ligase subunit beta [Deltaproteobacteria bacterium] diamond 246 116 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
10169637 10169637 PRJNA883229_P_NODE_13088_length_247_cov_0.896552_g13042_i0 PRJNA883229 13088 247 0.896552 2.21448344 Corallococcus 83461 Bacteria Bacteria 75 4.76e-9   NTclustered gi|337255776|gb|CP002830.1| 35 g13042 i0 92.308 0.421052631578947 52 4 21 0 191 242 5421086 5421035 Myxococcus macrosporus strain HW-1, complete genome blastn 104 75 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
23812134 23812134 PRJNA883229_P_NODE_10579_length_250_cov_0.881356_g10533_i0 PRJNA883229 10579 250 0.881356 2.20339 Archangium violaceum 83451 Bacteria Bacteria 292 1.2299999999999999e-74   NTclustered gi|1981856374|gb|CP069338.1| 83451 g10533 i0 87.843 2.708 255 24 99 6 2 250 3989163 3988910 Archangium violaceum strain SDU34 chromosome, complete genome blastn 677 292 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
27149742 27149742 PRJNA883229_P_NODE_12562_length_248_cov_0.868571_g12516_i0 PRJNA883229 12562 248 0.868571 2.15405608 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.4 0.00166   NR MBN2575724.1 2026735 g12516 i0 33.3 1.66935483870968 69 38 73.8 2 200 18 25 93 MBN2575724.1 DUF1566 domain-containing protein [Deltaproteobacteria bacterium] diamond 414 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27339969 27339969 PRJNA883229_P_NODE_10323_length_251_cov_0.876404_g10277_i0 PRJNA883229 10323 251 0.876404 2.19977404 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 135 5.3e-36   NR MBN2397300.1 2026735 g10277 i0 75.9 2.97609561752988 83 20 99.2 0 249 1 36 118 MBN2397300.1 thiolase family protein [Deltaproteobacteria bacterium] diamond 747 135 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27813752 27813752 PRJNA883229_P_NODE_9464_length_252_cov_0.871508_g9418_i0 PRJNA883229 9464 252 0.871508 2.19620016 Kofleriaceae bacterium 2212474 Bacteria Bacteria 94.7 5.51e-22   NR HEX7837634.1 2212474 g9418 i0 57.5 1.73809523809524 73 30 86.9 1 252 34 127 198 HEX7837634.1 hypothetical protein [Kofleriaceae bacterium] diamond 438 94.7 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28137370 28137370 PRJNA883229_P_NODE_15705_length_243_cov_0.917647_g15659_i0 PRJNA883229 15705 243 0.917647 2.22988221 Bacteria 2 Bacteria Bacteria 43.1 0.026   NR MCC6849087.1 2026735 g15659 i0 42.2 2.23456790123457 64 28 70.4 3 35 205 284 345 MCC6849087.1 FAD-dependent monooxygenase [Deltaproteobacteria bacterium] diamond 543 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28705624 28705624 PRJNA883229_P_NODE_11827_length_249_cov_0.886364_g11781_i0 PRJNA883229 11827 249 0.886364 2.20704636 Anaeromyxobacter 161492 Bacteria Bacteria 114 2.6200000000000003e-27   NR HET9555004.1 2510643 g11781 i0 74.1 1.96385542168675 81 21 97.6 0 6 248 304 384 HET9555004.1 transcription-repair coupling factor [Anaeromyxobacteraceae bacterium] diamond 489 115 0.991304347826087 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
29770927 29770927 PRJNA883229_P_NODE_15111_length_244_cov_0.912281_g15065_i0 PRJNA883229 15111 244 0.912281 2.22596564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 134 9.34e-35   NR MDA8125027.1 2026735 g15065 i0 84 0.995901639344262 81 13 99.6 0 2 244 330 410 MDA8125027.1 NAD(P)H-hydrate dehydratase [Deltaproteobacteria bacterium] diamond 243 134 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30340278 30340278 PRJNA883229_P_NODE_6232_length_285_cov_1.424528_g6186_i0 PRJNA883229 6232 285 1.424528 4.0599048 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.0245   NR MCC7541433.1 2026735 g6186 i0 34.7 1 95 51 89.5 4 4 258 151 244 MCC7541433.1 L,D-transpeptidase family protein [Deltaproteobacteria bacterium] diamond 285 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30940179 30940179 PRJNA883229_P_NODE_11574_length_249_cov_0.886364_g11528_i0 PRJNA883229 11574 249 0.886364 2.20704636 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42.7 0.0406   NR MCL5884410.1 2026735 g11528 i0 34.5 1.04819277108434 87 49 96.4 2 4 243 295 380 MCL5884410.1 CDP-glycerol glycerophosphotransferase family protein [Deltaproteobacteria bacterium] diamond 261 42.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31192423 31192423 PRJNA883229_P_NODE_15175_length_244_cov_0.912281_g15129_i0 PRJNA883229 15175 244 0.912281 2.22596564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 85.5 3.04e-19   NR MEI9475910.1 2026735 g15129 i0 86.3 0.627049180327869 51 7 62.7 0 2 154 75 125 MEI9475910.1 rRNA maturation RNase YbeY [Deltaproteobacteria bacterium] diamond 153 85.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32268518 32268518 PRJNA883229_P_NODE_13658_length_246_cov_0.901734_g13612_i0 PRJNA883229 13658 246 0.901734 2.21826564 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 143 9.749999999999999e-40   NR MBM3303422.1 2026735 g13612 i0 87.7 0.98780487804878 81 8 98.8 1 244 2 134 212 MBM3303422.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 243 143 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32490010 32490010 PRJNA883229_P_NODE_12399_length_248_cov_0.891429_g12353_i0 PRJNA883229 12399 248 0.891429 2.21074392 Kofleriaceae bacterium 2212474 Bacteria Bacteria 152 3.639999999999999e-43   NR MFN0248613.1 2212474 g12353 i0 90.1 0.858870967741935 71 7 85.9 0 2 214 167 237 MFN0248613.1 hypothetical protein [Kofleriaceae bacterium] diamond 213 152 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32521792 32521792 PRJNA883229_P_NODE_9339_length_252_cov_0.871508_g9293_i0 PRJNA883229 9339 252 0.871508 2.19620016 Polyangiaceae bacterium 2268199 Bacteria Bacteria 63.5 1.93e-9   NR MCL2724779.1 2268199 g9293 i0 45.3 0.892857142857143 75 34 89.3 1 26 250 452 519 MCL2724779.1 hypothetical protein [Polyangiaceae bacterium] diamond 225 63.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;