RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA883229" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA883229 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11063504 11063504 PRJNA883229_P_NODE_12489_length_248_cov_0.891429_g12443_i0 PRJNA883229 12489 248 0.891429 2.21074392 Cladochytriaceae 109915 Fungi Fungi 115 1.02e-27   NR KAJ1555822.1 1604274 g12443 i0 63.4 4.91129032258065 82 30 99.2 0 3 248 365 446 KAJ1555822.1 hypothetical protein HK405_012346 [Cladochytrium tenue] diamond 1218 116 0.991379310344828 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium tenue
29897514 29897514 PRJNA883229_P_NODE_11671_length_249_cov_0.886364_g11625_i0 PRJNA883229 11671 249 0.886364 2.20704636 Neocallimastix lanati (nom. inval.) 2767002 Fungi Fungi 50.8 5.74e-5   NR KAG4097424.1 2767002 g11625 i0 35.8 0.807228915662651 67 33 71.1 2 37 213 230 294 KAG4097424.1 hypothetical protein H8356DRAFT_1425497 [Neocallimastix lanati (nom. inval.)] diamond 201 50.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Neocallimastix Neocallimastix lanati (nom. inval.)
30118432 30118432 PRJNA883229_P_NODE_2872_length_380_cov_1.267101_g2826_i0 PRJNA883229 2872 380 1.267101 4.8149838 Globomyces pollinis-pini 382532 Fungi Fungi 231 2.38e-73   NR KAI8898917.1 382532 g2826 i0 89.7 3.97894736842105 126 13 99.5 0 1 378 123 248 KAI8898917.1 mitochondrial carrier domain-containing protein [Globomyces pollinis-pini] diamond 1512 231 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Globomycetaceae Globomyces Globomyces pollinis-pini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;