RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA883229" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA883229 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
859901 859901 PRJNA883229_P_NODE_10441_length_251_cov_0.876404_g10395_i0 PRJNA883229 10441 251 0.876404 2.19977404 Ostreococcus tauri 70448 Plants Plants 104 6.19e-18   NTclustered gi|308808631|ref|XM_003081578.1| 70448 g10395 i0 79.085 1.26693227091633 153 30 61 2 55 206 1544 1393 Ostreococcus tauri tRNA-splicing ligase, RtcB (OT_ostta10g01920), partial mRNA blastn 318 104 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
16162628 16162628 PRJNA883229_P_NODE_14073_length_245_cov_0.906977_g14027_i0 PRJNA883229 14073 245 0.906977 2.22209365 Chaetomorpha valida 1213231 Plants Plants 145 1.17e-38   NR AIJ27588.1 1213231 g14027 i0 93.8 0.991836734693878 81 5 99.2 0 243 1 367 447 AIJ27588.1 heat shock protein 70 [Chaetomorpha valida] diamond 243 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Cladophoraceae Chaetomorpha Chaetomorpha valida
17818629 17818629 PRJNA883229_P_NODE_4434_length_322_cov_0.883534_g4388_i0 PRJNA883229 4434 322 0.883534 2.84497948 Eukaryota 2759 Plants Plants 385 2.62e-102   NTclustered gi|969822372|gb|KT950953.1| 3129 g4388 i0 88.199 96.6024844720497 322 38 100 0 1 322 648 327 Bryopsis maxima actin gene, partial cds blastn 31106 385 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis maxima
32237093 32237093 PRJNA883229_P_NODE_15318_length_244_cov_0.912281_g15272_i0 PRJNA883229 15318 244 0.912281 2.22596564 Cymbomonas tetramitiformis 36881 Plants Plants 71.2 8.92e-13   NR KAK3256757.1 36881 g15272 i0 75 1.18032786885246 44 11 54.1 0 113 244 29 72 KAK3256757.1 hypothetical protein CYMTET_34123 [Cymbomonas tetramitiformis] diamond 288 71.2 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;