RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA883229" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA883229 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22536637 22536637 PRJNA883229_P_NODE_11818_length_249_cov_0.886364_g11772_i0 PRJNA883229 11818 249 0.886364 2.20704636 Chlorobiota bacterium 2268192 Bacteria Bacteria 159 3.0699999999999992e-43   NR GDX65662.1 2268192 g11772 i0 88 1 83 10 100 0 1 249 93 175 GDX65662.1 UvrABC system protein A [Chlorobiota bacterium] diamond 249 159 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
29013620 29013620 PRJNA883229_P_NODE_11328_length_249_cov_0.886364_g11282_i0 PRJNA883229 11328 249 0.886364 2.20704636 Chlorobiota bacterium 2268192 Bacteria Bacteria 148 3.43e-39   NR GDX65817.1 2268192 g11282 i0 89 0.987951807228916 82 9 98.8 0 2 247 855 936 GDX65817.1 hypothetical protein LBMAG36_08840 [Chlorobiota bacterium] diamond 246 148 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;