RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA883229", tax_clade = "Opisthokonta" and tax_phylum = "Porifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Porifera · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA883229 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5963289 5963289 PRJNA883229_P_NODE_5205_length_303_cov_3.386957_g5159_i0 PRJNA883229 5205 303 3.386957 10.26247971 Sycon ciliatum 27933 Porifera other_Eukaryota 292 1.53e-74   NTclustered gi|2732895212|ref|XM_065318941.1| 27933 g5159 i0 89.565 74.5610561056106 230 24 76 0 2 231 380 151 PREDICTED: Sycon ciliatum tubulin alpha-1C chain (LOC135804957), transcript variant X2, mRNA blastn 22592 292 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
29834229 29834229 PRJNA883229_P_NODE_13151_length_247_cov_0.896552_g13105_i0 PRJNA883229 13151 247 0.896552 2.21448344 Amphimedon queenslandica 400682 Porifera other_Eukaryota 79.7 3.68e-15   NR XP_003389391.1 400682 g13105 i0 54.3 0.850202429149798 70 27 85 1 247 38 312 376 XP_003389391.1 PREDICTED: cystathionine beta-synthase [Amphimedon queenslandica] diamond 210 79.7 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;