RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA883229" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA883229 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4688385 4688385 PRJNA883229_P_NODE_4984_length_308_cov_2.365957_g4938_i0 PRJNA883229 4984 308 2.365957 7.28714756 Eumycetozoa 142796 Evosea other_Eukaryota 194 3.21e-56   NR KYR00848.1 361077 g4938 i0 89.8 9.6038961038961 98 10 95.5 0 13 306 4 101 KYR00848.1 heat shock protein [Tieghemostelium lacteum] diamond 2958 195 0.994871794871795 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
18711407 18711407 PRJNA883229_P_NODE_775_length_690_cov_2.273906_g732_i0 PRJNA883229 775 690 2.273906 15.6899514 Dictyostelium purpureum 5786 Evosea other_Eukaryota 62.1 1.14e-4   NTclustered gi|330790858|ref|XM_003283465.1| 5786 g732 i0 92.857 0.0608695652173913 42 3 6 0 388 429 1368 1327 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_147180), partial mRNA blastn 42 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
28097606 28097606 PRJNA883229_P_NODE_15685_length_243_cov_0.917647_g15639_i0 PRJNA883229 15685 243 0.917647 2.22988221 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 84.7 6.15e-17   NR KYQ94389.1 361077 g15639 i0 50.6 2.97530864197531 79 39 97.5 0 5 241 166 244 KYQ94389.1 transmembrane protein [Tieghemostelium lacteum] diamond 723 84.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32237089 32237089 PRJNA883229_P_NODE_13838_length_246_cov_0.901734_g13792_i0 PRJNA883229 13838 246 0.901734 2.21826564 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 108 3.66e-25   NR KYR02049.1 361077 g13792 i0 66.7 0.98780487804878 81 27 98.8 0 2 244 421 501 KYR02049.1 SNF2-related domain-containing protein [Tieghemostelium lacteum] diamond 243 108 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;