RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA881257", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA881257 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30276822 30276822 PRJNA881257_P_NODE_16352_length_165_cov_0.896552_g16107_i0 PRJNA881257 16352 165 0.896552 1.4793108 Sphaerochaeta sp. 1972642 Bacteria Bacteria 77.4 1.93e-15   NR MCH3906960.1 1972642 g16107 i0 100 0.672727272727273 37 0 67.3 0 164 54 216 252 MCH3906960.1 N-acetylmuramoyl-L-alanine amidase [Sphaerochaeta sp.] diamond 111 77.4 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta sp.
32647241 32647241 PRJNA881257_P_NODE_15660_length_166_cov_1.683761_g15415_i0 PRJNA881257 15660 166 1.683761 2.79504326 Sphaerochaeta sp. 1972642 Bacteria Bacteria 110 3.25e-27   NR MCH3907453.1 1972642 g15415 i0 100 0.975903614457831 54 0 97.6 0 3 164 232 285 MCH3907453.1 aminotransferase class V-fold PLP-dependent enzyme [Sphaerochaeta sp.] diamond 162 110 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;