RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA881257", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA881257 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26706850 26706850 PRJNA881257_P_NODE_5221_length_333_cov_1.968310_g4977_i0 PRJNA881257 5221 333 1.96831 6.5544723 Onchocerca flexuosa 387005 Nematoda Nematoda 89.7 3.53e-18   NR OZC10585.1 387005 g4977 i0 58.8 3.09009009009009 68 28 61.3 0 331 128 309 376 OZC10585.1 fork head domain protein [Onchocerca flexuosa] diamond 1029 89.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca flexuosa
32521731 32521731 PRJNA881257_P_NODE_17159_length_164_cov_0.904348_g16914_i0 PRJNA881257 17159 164 0.904348 1.48313072 Ancylostoma duodenale 51022 Nematoda Nematoda 41.6 0.0238   NR KIH44305.1 51022 g16914 i0 51.6 0.567073170731707 31 15 56.7 0 23 115 4 34 KIH44305.1 calreticulin family protein, partial [Ancylostoma duodenale] diamond 93 41.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
32521738 32521738 PRJNA881257_P_NODE_8299_length_241_cov_1.083333_g8054_i0 PRJNA881257 8299 241 1.083333 2.61083253 Meloidogyne enterolobii 390850 Nematoda Nematoda 51.2 3.59e-5   NR CAD2167694.1 390850 g8054 i0 45.8 0.597510373443983 48 26 59.8 0 155 12 16 63 CAD2167694.1 unnamed protein product [Meloidogyne enterolobii] diamond 144 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;