RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA879314" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA879314 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11061461 11061461 PRJNA879314_P_NODE_10649_length_243_cov_0.917647_g10599_i0 PRJNA879314 10649 243 0.917647 2.22988221 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 171 5.8e-38   NTclustered gi|695406619|ref|XM_009525862.1| 67593 g10599 i0 84.181 1.95884773662551 177 26 72 2 36 211 137 312 Phytophthora sojae hypothetical protein partial mRNA blastn 476 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
15268317 15268317 PRJNA879314_P_NODE_3712_length_269_cov_0.964286_g3662_i0 PRJNA879314 3712 269 0.964286 2.59392934 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 364 2.7899999999999998e-96   NTclustered gi|675199806|ref|XM_008910540.1| 761204 g3662 i0 91.078 99.0446096654275 269 24 100 0 1 269 257 525 Phytophthora parasitica INRA-310 calmodulin mRNA blastn 26643 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
19984519 19984519 PRJNA879314_P_NODE_1516_length_362_cov_1.339100_g1466_i0 PRJNA879314 1516 362 1.3391 4.847542 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 224 6.869999999999998e-54   NTclustered gi|2795024423|ref|XM_067938288.1| 4785 g1466 i0 79.341 30.828729281768 334 57 91 12 30 357 1 328 Phytophthora cinnamomi 60S ribosomal protein (IUM83_13598), partial mRNA blastn 11160 224 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
26611957 26611957 PRJNA879314_P_NODE_4561_length_253_cov_0.866667_g4511_i0 PRJNA879314 4561 253 0.866667 2.19266751 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 50.8 6.1e-5   NR TMW63474.1 41045 g4511 i0 39.7 0.687747035573123 58 35 68.8 0 19 192 130 187 TMW63474.1 hypothetical protein Poli38472_002415 [Pythium oligandrum] diamond 174 50.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
26620113 26620113 PRJNA879314_P_NODE_11001_length_242_cov_0.923077_g10951_i0 PRJNA879314 11001 242 0.923077 2.23384634 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 52.8 1e-5   NR KAF0699222.1 120398 g10951 i0 34.1 2.05785123966942 82 52 99.2 2 241 2 169 250 KAF0699222.1 hypothetical protein As57867_010148 [Aphanomyces stellatus] diamond 498 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
28981876 28981876 PRJNA879314_P_NODE_3368_length_277_cov_1.250000_g3318_i0 PRJNA879314 3368 277 1.25 3.4625 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.014   NR CAI5730517.1 162125 g3318 i0 37.3 0.552346570397112 51 32 55.2 0 83 235 35 85 CAI5730517.1 unnamed protein product [Hyaloperonospora brassicae] diamond 153 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;