RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879314" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879314 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3408605 3408605 PRJNA879314_P_NODE_10043_length_244_cov_0.912281_g9993_i0 PRJNA879314 10043 244 0.912281 2.22596564 Strongyloides ratti 34506 Nematoda Nematoda 140 6.249999999999999e-37   NR XP_024507153.1 34506 g9993 i0 80.2 2.98770491803279 81 16 99.6 0 2 244 236 316 XP_024507153.1 Bifunctional glutamate/proline--tRNA ligase [Strongyloides ratti] diamond 729 140 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
8510753 8510753 PRJNA879314_P_NODE_10607_length_243_cov_0.917647_g10557_i0 PRJNA879314 10607 243 0.917647 2.22988221 Caenorhabditis elegans 6239 Nematoda Nematoda 449 6.65e-122   NTclustered gi|687865808|emb|LK927983.1| 6239 g10557 i0 100 16.3168724279835 243 0 100 0 1 243 44785 45027 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000072 blastn 3965 449 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
11061468 11061468 PRJNA879314_P_NODE_11189_length_242_cov_0.923077_g11139_i0 PRJNA879314 11189 242 0.923077 2.23384634 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.022   NTclustered gi|687022654|emb|LM525568.1| 174720 g11139 i0 100 0.115702479338843 28 0 12 0 15 42 228268 228241 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000010 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;