RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA879314" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879314 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5961060 5961060 PRJNA879314_P_NODE_10565_length_243_cov_0.917647_g10515_i0 PRJNA879314 10565 243 0.917647 2.22988221 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 127 1.08e-34   NR MEP6571880.1 2026742 g10515 i0 88.7 2.62962962962963 71 8 87.7 0 31 243 1 71 MEP6571880.1 transcriptional repressor LexA [Gemmatimonadota bacterium] diamond 639 127 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
13611506 13611506 PRJNA879314_P_NODE_4531_length_253_cov_0.866667_g4481_i0 PRJNA879314 4531 253 0.866667 2.19266751 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 385 1.99e-102   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g4481 i0 94.071 1.12252964426877 253 15 100 0 1 253 4845167 4844915 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 284 385 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
27624171 27624171 PRJNA879314_P_NODE_2764_length_294_cov_1.208145_g2714_i0 PRJNA879314 2764 294 1.208145 3.5519463 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 44.3 0.0198   NR HTT69055.1 2448054 g2714 i0 33.7 0.908163265306122 89 56 89.8 2 280 17 187 273 HTT69055.1 hypothetical protein [Gemmatimonadales bacterium] diamond 267 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
28381748 28381748 PRJNA879314_P_NODE_7986_length_247_cov_0.896552_g7936_i0 PRJNA879314 7986 247 0.896552 2.21448344 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 117 1.42e-28   NR HEX7547346.1 2026741 g7936 i0 71.6 0.983805668016194 81 23 98.4 0 2 244 78 158 HEX7547346.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 243 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28855181 28855181 PRJNA879314_P_NODE_4388_length_253_cov_0.866667_g4338_i0 PRJNA879314 4388 253 0.866667 2.19266751 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 88.6 1.65e-19   NR HYW51013.1 2026741 g4338 i0 67.7 0.735177865612648 62 20 73.5 0 2 187 144 205 HYW51013.1 histidine phosphatase family protein [Gemmatimonadaceae bacterium] diamond 186 88.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31105816 31105816 PRJNA879314_P_NODE_11015_length_242_cov_0.923077_g10965_i0 PRJNA879314 11015 242 0.923077 2.23384634 Bacteria 2 Bacteria Bacteria 108 1.8e-25   NR MEO7822682.1 2026741 g10965 i0 61.5 5.7396694214876 78 29 96.7 1 7 240 574 650 MEO7822682.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 1389 109 0.990825688073395 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32616095 32616095 PRJNA879314_P_NODE_10000_length_244_cov_0.912281_g9950_i0 PRJNA879314 10000 244 0.912281 2.22596564 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 162 5.49e-49   NR MBY0492309.1 2026741 g9950 i0 97.5 0.995901639344262 81 2 99.6 0 243 1 66 146 MBY0492309.1 ribose 5-phosphate isomerase B [Gemmatimonadaceae bacterium] diamond 243 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;