RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879314" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879314 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16160495 16160495 PRJNA879314_P_NODE_1473_length_366_cov_1.150171_g1423_i0 PRJNA879314 1473 366 1.150171 4.20962586 Mantoniella tinhauana 3097027 Plants Plants 309 1.8700000000000003e-79   NTclustered gi|2735153279|gb|CP140064.1| 3097027 g1423 i0 83.432 9.13114754098361 338 50 92 6 1 335 1056611 1056277 Mantoniella tinhauana isolate LFS chromosome 3 blastn 3342 309 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
29770859 29770859 PRJNA879314_P_NODE_1951_length_330_cov_0.910506_g1901_i0 PRJNA879314 1951 330 0.910506 3.0046698 Trebouxia sp. C 2796353 Plants Plants 67 2.22e-10   NR KAL0052756.1 2905655 g1901 i0 50.8 2.53636363636364 65 32 59.1 0 195 1 47 111 KAL0052756.1 hypothetical protein WJX82_007168 [Trebouxia sp. C0006] diamond 837 67 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0006
31509190 31509190 PRJNA879314_P_NODE_2616_length_300_cov_0.933921_g2566_i0 PRJNA879314 2616 300 0.933921 2.801763 Cymbomonas tetramitiformis 36881 Plants Plants 43.5 0.0411   NR KAK3287948.1 36881 g2566 i0 35.6 0.73 73 45 71 1 4 216 907 979 KAK3287948.1 hypothetical protein CYMTET_4556 [Cymbomonas tetramitiformis] diamond 219 43.5 1 Eukaryota   Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Cymbomonas Cymbomonas tetramitiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;