RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA879314" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA879314 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7236045 7236045 PRJNA879314_P_NODE_7386_length_248_cov_0.891429_g7336_i0 PRJNA879314 7386 248 0.891429 2.21074392 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 453 5.2600000000000005e-123   NTclustered gi|219130341|ref|XM_002185290.1| 556484 g7336 i0 99.597 1 248 1 100 0 1 248 976 729 Phaeodactylum tricornutum CCAP 1055/1 predicted protein mRNA blastn 248 453 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
8510768 8510768 PRJNA879314_P_NODE_1187_length_394_cov_7.495327_g1137_i0 PRJNA879314 1187 394 7.495327 29.53158838 Nitzschia ovalis 908985 SAR_Eukaryotes SAR_Eukaryotes 171 9.97e-38   NTclustered gi|2202538962|gb|OM891868.1| 908985 g1137 i0 84.091 48.2893401015228 176 28 45 0 1 176 5530 5705 Nitzschia ovalis small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19026 171 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia ovalis
31350974 31350974 PRJNA879314_P_NODE_4336_length_253_cov_0.866667_g4286_i0 PRJNA879314 4336 253 0.866667 2.19266751 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0313   NR KAL3787437.1 29204 g4286 i0 32.8 0.723320158102767 61 39 70 1 228 52 394 454 KAL3787437.1 hypothetical protein HJC23_001834 [Cyclotella cryptica] diamond 183 43.1 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
31951783 31951783 PRJNA879314_P_NODE_2117_length_322_cov_1.253012_g2067_i0 PRJNA879314 2117 322 1.253012 4.03469864 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 66.6 3.51e-11   NR XP_002179401.1 556484 g2067 i0 80.6 4.36024844720497 36 7 33.5 0 213 320 1 36 XP_002179401.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 1404 66.6 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;