RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA879314", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA879314 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26865741 26865741 PRJNA879314_P_NODE_5121_length_252_cov_0.871508_g5071_i0 PRJNA879314 5121 252 0.871508 2.19620016 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 45.1 0.00659   NR MBM3244336.1 2035772 g5071 i0 34.9 1.98809523809524 86 53 98.8 2 2 250 5226 5311 MBM3244336.1 NAD-dependent epimerase/dehydratase family protein [Candidatus Omnitrophota bacterium] diamond 501 45.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28294986 28294986 PRJNA879314_P_NODE_4726_length_253_cov_0.866667_g4676_i0 PRJNA879314 4726 253 0.866667 2.19266751 Bacteria 2 Bacteria Bacteria 100 1.19e-22   NR MCK4859235.1 2035772 g4676 i0 57.1 4.9802371541502 84 35 99.6 1 253 2 96 178 MCK4859235.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 1260 101 0.99009900990099 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29960484 29960484 PRJNA879314_P_NODE_10191_length_244_cov_0.912281_g10141_i0 PRJNA879314 10191 244 0.912281 2.22596564 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 48.5 3.39e-4   NR MBN1587261.1 2035772 g10141 i0 35.1 0.909836065573771 74 47 91 1 223 2 2 74 MBN1587261.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 222 48.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30403280 30403280 PRJNA879314_P_NODE_10773_length_243_cov_0.917647_g10723_i0 PRJNA879314 10773 243 0.917647 2.22988221 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 81.3 2.71e-16   NR MFA6383735.1 2035772 g10723 i0 47.7 1.06172839506173 86 40 100 2 243 1 15 100 MFA6383735.1 nitroreductase family protein [Candidatus Omnitrophota bacterium] diamond 258 81.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;