RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA879314", tax_clade = "Nitrospinota/Tectimicrobiota group" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 1 ✖

tax_clade 1

  • Nitrospinota/Tectimicrobiota group · 1 ✖

bioproject 1

  • PRJNA879314 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31635460 31635460 PRJNA879314_P_NODE_11336_length_242_cov_0.923077_g11286_i0 PRJNA879314 11336 242 0.923077 2.23384634 Nitrospina gracilis 35801 Bacteria Bacteria 56.6 4.63e-7   NR WP_237098240.1 35801 g11286 i0 45.2 1.52479338842975 62 33 76.9 1 240 55 441 501 WP_237098240.1 F0F1 ATP synthase subunit alpha [Nitrospina gracilis] diamond 369 56.6 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina gracilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;