RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA879314", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Absconditibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA879314 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9785671 9785671 PRJNA879314_P_NODE_10808_length_243_cov_0.894118_g10758_i0 PRJNA879314 10808 243 0.894118 2.17270674 candidate division SR1 bacterium 2044938 Bacteria Bacteria 57 2.47e-7   NR MBB1578363.1 2044938 g10758 i0 49.2 0.777777777777778 63 32 77.8 0 6 194 44 106 MBB1578363.1 hypothetical protein [candidate division SR1 bacterium] diamond 189 57 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
29234334 29234334 PRJNA879314_P_NODE_5729_length_251_cov_0.876404_g5679_i0 PRJNA879314 5729 251 0.876404 2.19977404 candidate division SR1 bacterium 2044938 Bacteria Bacteria 133 1.53e-35   NR MBF0932139.1 2044938 g5679 i0 79.5 1.9840637450199201 83 17 99.2 0 1 249 158 240 MBF0932139.1 DHH family phosphoesterase [candidate division SR1 bacterium] diamond 498 133 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
30118377 30118377 PRJNA879314_P_NODE_6932_length_249_cov_0.886364_g6882_i0 PRJNA879314 6932 249 0.886364 2.20704636 candidate division SR1 bacterium 2044938 Bacteria Bacteria 73.2 4.09e-13   NR PZM87412.1 2044938 g6882 i0 42.2 1 83 48 100 0 249 1 109 191 PZM87412.1 MAG: hypothetical protein DLD55_01450 [candidate division SR1 bacterium] diamond 249 73.2 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
30245020 30245020 PRJNA879314_P_NODE_11392_length_242_cov_0.893491_g11342_i0 PRJNA879314 11392 242 0.893491 2.16224822 Candidatus Absconditabacterales bacterium 2927939 Bacteria Bacteria 47 0.00118   NR HRU49885.1 2927939 g11342 i0 34.8 0.855371900826446 69 43 85.5 1 220 14 473 539 HRU49885.1 hypothetical protein [Candidatus Absconditabacterales bacterium] diamond 207 47 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota   Candidatus Absconditabacterales     Candidatus Absconditabacterales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;