RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA879221" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879221 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3408005 3408005 PRJNA879221_P_NODE_53903_length_247_cov_0.885057_g53763_i0 PRJNA879221 53903 247 0.885057 2.18609079 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 147 8.77e-39   NR HMP76893.1 2212473 g53763 i0 92.7 9.95951417004049 82 6 99.6 0 247 2 914 995 HMP76893.1 type I restriction endonuclease subunit R [Kiritimatiellia bacterium] diamond 2460 147 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
27852920 27852920 PRJNA879221_P_NODE_57044_length_245_cov_0.895349_g56904_i0 PRJNA879221 57044 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 165 1.78e-49   NR MBP3406883.1 2212473 g56904 i0 100 1.98367346938776 81 0 99.2 0 2 244 114 194 MBP3406883.1 hypothetical protein [Kiritimatiellia bacterium] diamond 486 165 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;