RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA879221", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA879221 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2132558 2132558 PRJNA879221_P_NODE_55202_length_246_cov_0.890173_g55062_i0 PRJNA879221 55202 246 0.890173 2.18982558 Acidobacteriota bacterium 1978231 Bacteria Bacteria 94.7 8.56e-21   NR MDQ3488162.1 1978231 g55062 i0 57.5 0.975609756097561 80 33 97.6 1 242 3 248 326 MDQ3488162.1 VWA domain-containing protein [Acidobacteriota bacterium] diamond 240 94.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27687495 27687495 PRJNA879221_P_NODE_56484_length_245_cov_0.895349_g56344_i0 PRJNA879221 56484 245 0.895349 2.19360505 Acidobacteriota bacterium 1978231 Bacteria Bacteria 134 1.78e-35   NR MCA1733954.1 1978231 g56344 i0 92.2 0.942857142857143 77 6 94.3 0 233 3 1 77 MCA1733954.1 IS3 family transposase [Acidobacteriota bacterium] diamond 231 134 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28508096 28508096 PRJNA879221_P_NODE_54567_length_246_cov_0.890173_g54427_i0 PRJNA879221 54567 246 0.890173 2.18982558 Acidobacteriota bacterium 1978231 Bacteria Bacteria 121 8.979999999999998e-31   NR MDI9599390.1 1978231 g54427 i0 69.1 0.98780487804878 81 25 98.8 0 244 2 109 189 MDI9599390.1 sigma-70 family RNA polymerase sigma factor [Acidobacteriota bacterium] diamond 243 121 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28634566 28634566 PRJNA879221_P_NODE_56707_length_245_cov_0.895349_g56567_i0 PRJNA879221 56707 245 0.895349 2.19360505 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 147 4.51e-39   NR HXW06398.1 2910147 g56567 i0 86.4 1.98367346938776 81 11 99.2 0 243 1 363 443 HXW06398.1 ankyrin repeat domain-containing protein [Vicinamibacterales bacterium] diamond 486 147 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
29052937 29052937 PRJNA879221_P_NODE_55748_length_246_cov_0.890173_g55608_i0 PRJNA879221 55748 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 140 2.23e-36   NR MBI3696435.1 1978231 g55608 i0 77.5 1.95121951219512 80 17 97.6 1 5 244 560 638 MBI3696435.1 serine/threonine-protein kinase [Acidobacteriota bacterium] diamond 480 140 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
30181586 30181586 PRJNA879221_P_NODE_5052_length_841_cov_3.611979_g4937_i0 PRJNA879221 5052 841 3.611979 30.37674339 Blastocatellia bacterium 2052146 Bacteria Bacteria 245 5.4299999999999997e-76   NR MEA2173597.1 2052146 g4937 i0 44.7 1.9512485136742 273 142 94.2 2 3 794 74 346 MEA2173597.1 hypothetical protein [Blastocatellia bacterium] diamond 1641 245 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
32402918 32402918 PRJNA879221_P_NODE_59639_length_243_cov_1.476471_g59499_i0 PRJNA879221 59639 243 1.476471 3.58782453 root 1 Root_unresolved Root_unresolved 114 2.28e-27   NR MFL6416843.1 2212468 g59499 i0 73.8 3.95061728395062 80 21 98.8 0 242 3 403 482 MFL6416843.1 HK97 family phage prohead protease [Bryobacteraceae bacterium] diamond 960 115 0.991304347826087 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;