RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879221" and tax_kingdom = "Pararnavirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA879221 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9785047 9785047 PRJNA879221_P_NODE_54568_length_246_cov_0.890173_g54428_i0 PRJNA879221 54568 246 0.890173 2.18982558 Lentivirus humimdef1 3418650 Viruses Viruses 54.7 0.006   NTclustered gi|2859928216|gb|PQ511684.1| 11676 g54428 i0 100 0.117886178861789 29 0 12 0 1 29 9493 9465 HIV-1 isolate GB1LV100191 from USA, complete genome blastn 29 54.7 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
30118352 30118352 PRJNA879221_P_NODE_2572_length_1163_cov_6.701835_g2489_i0 PRJNA879221 2572 1163 6.701835 77.94234105 Penicillium spinulosum metavirus 1 1755795 Viruses Viruses 602 3.07e-214   NR ALO50153.1 1755795 g2489 i0 77.3 0.944110060189166 366 82 94.2 1 68 1162 1 366 ALO50153.1 ORF1 [Penicillium spinulosum metavirus 1] diamond 1098 602 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Metaviridae   Penicillium spinulosum metavirus 1
31382602 31382602 PRJNA879221_P_NODE_54156_length_247_cov_0.885057_g54016_i0 PRJNA879221 54156 247 0.885057 2.18609079 Multiple sclerosis associated retrovirus 62805 Viruses Viruses 49.3 1.87e-4   NR AAB66528.1 62805 g54016 i0 61.5 0.983805668016194 39 15 47.4 0 239 123 299 337 AAB66528.1 polyprotein, partial [Multiple sclerosis associated retrovirus] diamond 243 49.7 0.991951710261569 Viruses Human endogenous retroviruses Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Human endogenous retrovirus W

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;