RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879221", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA879221 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5067817 5067817 PRJNA879221_P_NODE_28124_length_332_cov_5.718147_g27984_i0 PRJNA879221 28124 332 5.718147 18.98424804 Acholeplasma 2147 Bacteria Bacteria 608 1.479999999999999e-169   NTclustered gi|1403529253|emb|LS483439.1| 2148 g27984 i0 99.699 7.02409638554217 332 1 100 0 1 332 818366 818697 Acholeplasma laidlawii strain NCTC10116 genome assembly, chromosome: 1 blastn 2332 608 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
27403061 27403061 PRJNA879221_P_NODE_60403_length_243_cov_0.905882_g60263_i0 PRJNA879221 60403 243 0.905882 2.20129326 Mycoplasmopsis arginini 2094 Bacteria Bacteria 59.7 3.25e-9   NR SGA27241.1 2094 g60263 i0 71.4 12.5308641975309 42 12 51.9 0 114 239 2 43 SGA27241.1 Uncharacterised protein [Mycoplasmopsis arginini] diamond 3045 59.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30181582 30181582 PRJNA879221_P_NODE_17992_length_420_cov_1.043228_g17853_i0 PRJNA879221 17992 420 1.043228 4.3815576 Mycoplasmopsis arginini 2094 Bacteria Bacteria 46.6 0.00212   NR SGA27241.1 2094 g17853 i0 41.3 0.328571428571429 46 27 32.9 0 2 139 35 80 SGA27241.1 Uncharacterised protein [Mycoplasmopsis arginini] diamond 138 46.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;