RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA879221", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 7 ✖

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA879221 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5068173 5068173 PRJNA879221_P_NODE_51664_length_248_cov_0.880000_g51524_i0 PRJNA879221 51664 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 52.8 0.022   NTclustered gi|2531950174|emb|OY282494.1| 498747 g51524 i0 96.774 0.237903225806452 31 1 13 0 210 240 1979147 1979177 MAG: uncultured Dehalococcoidia bacterium genome assembly, chromosome: 1 blastn 59 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       uncultured Dehalococcoidia bacterium
13610804 13610804 PRJNA879221_P_NODE_50851_length_248_cov_1.565714_g50711_i0 PRJNA879221 50851 248 1.565714 3.88297072 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 169 2.13e-37   NTclustered gi|2874254133|emb|OY970218.1| 1672391 g50711 i0 79.835 7.19354838709677 243 39 96 10 2 239 1863382 1863619 MAG: uncultured Chloroflexia bacterium isolate MFD04716.bin.1.117 genome assembly, chromosome: 1 blastn 1784 169 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
22533903 22533903 PRJNA879221_P_NODE_53098_length_247_cov_0.885057_g52958_i0 PRJNA879221 53098 247 0.885057 2.18609079 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621706208|emb|OY764147.1| 2026734 g52958 i0 100 0.11336032388664 28 0 11 0 40 67 2805234 2805261 MAG: Dehalococcoidia bacterium isolate f074cb40-e989-4081-8985-b43b9a8eea1d genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
27403060 27403060 PRJNA879221_P_NODE_58083_length_244_cov_0.900585_g57943_i0 PRJNA879221 58083 244 0.900585 2.1974274 Anaerolineae bacterium 2052143 Bacteria Bacteria 102 1.06e-23   NR MBN8654838.1 2052143 g57943 i0 59.3 0.995901639344262 81 33 99.6 0 2 244 254 334 MBN8654838.1 hypothetical protein [Anaerolineae bacterium] diamond 243 102 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
29265623 29265623 PRJNA879221_P_NODE_51849_length_248_cov_0.880000_g51709_i0 PRJNA879221 51849 248 0.88 2.1824 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 43.1 0.0289   NR MFA5079641.1 2026734 g51709 i0 32.6 0.556451612903226 46 29 55.6 1 33 170 98 141 MFA5079641.1 PAS domain S-box protein [Dehalococcoidia bacterium] diamond 138 43.1 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
29675945 29675945 PRJNA879221_P_NODE_23830_length_361_cov_1.513889_g23690_i0 PRJNA879221 23830 361 1.513889 5.46513929 Anaerolineales bacterium 2073117 Bacteria Bacteria 111 1.1e-25   NR HXQ34421.1 2073117 g23690 i0 46.2 2.81717451523546 117 63 97.2 0 3 353 208 324 HXQ34421.1 hypothetical protein [Anaerolineales bacterium] diamond 1017 111 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales     Anaerolineales bacterium
31445762 31445762 PRJNA879221_P_NODE_47796_length_250_cov_0.870056_g47656_i0 PRJNA879221 47796 250 0.870056 2.17514 Candidatus Limnocylindrales bacterium 2952938 Bacteria Bacteria 133 8.849999999999999e-38   NR HET9756248.1 2952938 g47656 i0 84.6 1.824 78 12 93.6 0 235 2 1 78 HET9756248.1 cyclic nucleotide-binding domain-containing protein [Candidatus Limnocylindrales bacterium] diamond 456 133 1 Bacteria   Bacillati Chloroflexota Candidatus Limnocylindria Candidatus Limnocylindrales     Candidatus Limnocylindrales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;