RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA879221", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 5 ✖

bioproject 1

  • PRJNA879221 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8509892 8509892 PRJNA879221_P_NODE_36707_length_289_cov_1.425926_g36567_i0 PRJNA879221 36707 289 1.425926 4.12092614 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.007   NTclustered gi|1557394408|emb|LR031564.1| 45931 g36567 i0 100 0.100346020761246 29 0 10 0 1 29 23 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14885028 14885028 PRJNA879221_P_NODE_40652_length_272_cov_1.547739_g40512_i0 PRJNA879221 40652 272 1.547739 4.20985008 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.025   NTclustered gi|1557394408|emb|LR031564.1| 45931 g40512 i0 100 0.102941176470588 28 0 10 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17434975 17434975 PRJNA879221_P_NODE_21494_length_381_cov_15.577922_g21354_i0 PRJNA879221 21494 381 15.577922 59.35188282 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.036   NTclustered gi|1557394408|emb|LR031564.1| 45931 g21354 i0 100 0.073490813648294 28 0 7 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
19983313 19983313 PRJNA879221_P_NODE_10896_length_553_cov_7.070833_g10758_i0 PRJNA879221 10896 553 7.070833 39.10170649 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.004   NTclustered gi|1557394408|emb|LR031564.1| 45931 g10758 i0 97.059 0.0614828209764919 34 0 6 1 1 34 18 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
30845233 30845233 PRJNA879221_P_NODE_41034_length_271_cov_1.010101_g40894_i0 PRJNA879221 41034 271 1.010101 2.73737371 Trichinella papuae 268474 Nematoda Nematoda 85.9 5.99e-20   NR KRZ64190.1 268474 g40894 i0 70.9 0.608856088560886 55 16 60.9 0 170 6 1 55 KRZ64190.1 hypothetical protein T10_11819 [Trichinella papuae] diamond 165 85.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella papuae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;