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contig_metadata

26 rows where bioproject = "PRJNA879067" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 26 ✖

tax_clade 1

bioproject 1

  • PRJNA879067 · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2514428 2514428 PRJNA879067_P_NODE_27862_length_805_cov_37.857923_g24608_i0 PRJNA879067 27862 805 37.857923 304.75628015 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 163 3.5799999999999997e-35   NTclustered gi|813157874|ref|XM_012346896.1| 695850 g24608 i0 77.027 2.39254658385093 296 60 36 7 95 386 66 357 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1926 163 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
3790613 3790613 PRJNA879067_P_NODE_100903_length_259_cov_1.430108_g97417_i0 PRJNA879067 100903 259 1.430108 3.70397972 root 1 Root_unresolved Root_unresolved 473 4.25e-129   NTclustered gi|166044485|emb|CU367394.1| 100861 g97417 i0 99.614 127.610038610039 259 1 100 0 1 259 405 147 Aphanomyces euteiches cDNA blastn 33051 473 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4683562 4683562 PRJNA879067_P_NODE_4644_length_2326_cov_3.426099_g3315_i0 PRJNA879067 4644 2326 3.426099 79.69106274 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 216 6.009999999999999e-55   NR KAF0688222.1 120398 g3315 i0 58.9 2.2390369733448 180 72 23.1 2 687 1223 579 757 KAF0688222.1 hypothetical protein As57867_020026 [Aphanomyces stellatus] diamond 5208 216 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
5958313 5958313 PRJNA879067_P_NODE_42825_length_592_cov_3.556840_g39366_i0 PRJNA879067 42825 592 3.55684 21.0564928 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 207 1.1799999999999999e-48   NTclustered gi|325196715|emb|FR827504.1| 890382 g39366 i0 96.774 0.209459459459459 124 4 21 0 1 124 66 189 Albugo laibachii Nc14, genomic contig CONTIG_4671_NC14_v4_189_105 blastn 124 207 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10167319 10167319 PRJNA879067_P_NODE_108088_length_245_cov_0.895349_g104602_i0 PRJNA879067 108088 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 442 1.1199999999999994e-119   NTclustered gi|166046463|emb|CU367580.1| 100861 g104602 i0 99.184 98.9102040816327 245 2 100 0 1 245 346 102 Aphanomyces euteiches cDNA blastn 24233 442 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11058205 11058205 PRJNA879067_P_NODE_25769_length_850_cov_8.395109_g22567_i0 PRJNA879067 25769 850 8.395109 71.3584265 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 785 0   NTclustered gi|325193998|emb|FR824926.1| 890382 g22567 i0 90.94 1.10823529411765 585 51 69 2 23 607 2480 1898 Albugo laibachii Nc14, genomic contig CONTIG_1224_NC14_v4_2940_153 blastn 942 785 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
12335578 12335578 PRJNA879067_P_NODE_95490_length_278_cov_2.800000_g92004_i0 PRJNA879067 95490 278 2.8 7.784 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 416 7.879999999999999e-112   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g92004 i0 96.813 95.0107913669065 251 5 90 3 1 249 2250 2499 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 26413 416 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13607525 13607525 PRJNA879067_P_NODE_109451_length_243_cov_0.905882_g105965_i0 PRJNA879067 109451 243 0.905882 2.20129326 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 195 3.4399999999999997e-45   NTclustered gi|673016829|ref|XM_008864154.1| 157072 g105965 i0 91.489 0.580246913580247 141 12 58 0 103 243 475 335 Aphanomyces invadans hypothetical protein mRNA blastn 141 195 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
13609252 13609252 PRJNA879067_P_NODE_61571_length_439_cov_2.546448_g58086_i0 PRJNA879067 61571 439 2.546448 11.17890672 root 1 Root_unresolved Root_unresolved 61.6 8.2e-8   NR TMW55228.1 41045 g58086 i0 47.8 1.73576309794989 67 35 45.8 0 201 401 1 67 TMW55228.1 hypothetical protein Poli38472_013119 [Pythium oligandrum] diamond 762 61.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
13609662 13609662 PRJNA879067_P_NODE_76591_length_354_cov_2.615658_g73105_i0 PRJNA879067 76591 354 2.615658 9.25942932 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 608 1.579999999999999e-169   NTclustered gi|1923460157|gb|MW187635.1| 1982524 g73105 i0 100 93.8813559322034 329 0 93 0 1 329 469 141 Aphanomyces sp. isolate CCRJB_30 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 33234 608 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
16156456 16156456 PRJNA879067_P_NODE_104573_length_249_cov_1.102273_g101087_i0 PRJNA879067 104573 249 1.102273 2.74465977 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 263 9.56e-66   NTclustered gi|166035705|emb|CU351918.1| 100861 g101087 i0 88.636 14.3975903614458 220 20 88 4 1 218 849 633 Aphanomyces euteiches cDNA blastn 3585 263 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16157227 16157227 PRJNA879067_P_NODE_26713_length_829_cov_25.437831_g23486_i0 PRJNA879067 26713 829 25.437831 210.87961899 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 641 3.8899999999999996e-179   NTclustered gi|325194852|emb|FR825649.1| 890382 g23486 i0 87.257 1.6767189384801 565 69 68 1 1 562 52 616 Albugo laibachii Nc14, genomic contig CONTIG_2615_NC14_v4_682_163 blastn 1390 641 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
16158208 16158208 PRJNA879067_P_NODE_57793_length_465_cov_1.497449_g54308_i0 PRJNA879067 57793 465 1.497449 6.96313785 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 741 0   NTclustered gi|542687346|ref|NC_022178.1| 1202772 g54308 i0 97.273 101.54623655914 440 7 94 3 1 436 6341 5903 Achlya hypogyna mitochondrion, complete genome blastn 47219 741 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna
19090257 19090257 PRJNA879067_P_NODE_107755_length_245_cov_0.895349_g104269_i0 PRJNA879067 107755 245 0.895349 2.19360505 root 1 Root_unresolved Root_unresolved 435 1.88e-117   NTclustered gi|166044590|emb|CU367499.1| 100861 g104269 i0 98.77 98.9428571428571 244 3 99 0 1 244 219 462 Aphanomyces euteiches cDNA blastn 24241 435 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
19090722 19090722 PRJNA879067_P_NODE_75695_length_358_cov_5.656140_g72209_i0 PRJNA879067 75695 358 5.65614 20.2489812 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 529 1.2799999999999996e-145   NTclustered gi|2440150|emb|X75631.1| 4788 g72209 i0 93.333 98.2150837988827 360 21 100 3 1 358 3115 2757 P.megasperma gene for 28S ribosomal RNA blastn 35161 534 0.99063670411985 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
19981091 19981091 PRJNA879067_P_NODE_23276_length_910_cov_6.841099_g20190_i0 PRJNA879067 23276 910 6.841099 62.2540009 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 238 9.67e-74   NR GLD94438.1 114742 g20190 i0 69.2 7.49340659340659 172 52 56.4 1 609 97 42 213 GLD94438.1 hypothetical protein PINS_up003049 [Pythium insidiosum] diamond 6819 238 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
21258482 21258482 PRJNA879067_P_NODE_92397_length_289_cov_2.606481_g88911_i0 PRJNA879067 92397 289 2.606481 7.53273009 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 484 2.2299999999999998e-132   NTclustered gi|363498776|gb|JN662487.1| 120398 g88911 i0 100 88.8754325259516 262 0 91 0 1 262 286 25 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 25685 484 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
21641042 21641042 PRJNA879067_P_NODE_32697_length_719_cov_46.196594_g24608_i1 PRJNA879067 32697 719 46.196594 332.15351086 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 163 3.18e-35   NTclustered gi|813157874|ref|XM_012346896.1| 695850 g24608 i1 77.027 2.67872044506259 296 60 41 7 334 625 357 66 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 1926 163 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
23808129 23808129 PRJNA879067_P_NODE_74359_length_365_cov_2.339041_g70874_i0 PRJNA879067 74359 365 2.339041 8.53749965 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 429 1.37e-115   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g70874 i0 87.978 7.63013698630137 366 41 99 3 2 365 42046 41682 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 2785 429 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23808349 23808349 PRJNA879067_P_NODE_83019_length_326_cov_2.711462_g79533_i0 PRJNA879067 83019 326 2.711462 8.83936612 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 398 3.4199999999999996e-106   NTclustered gi|166048962|emb|CU355871.1| 100861 g79533 i0 90.728 31.5950920245399 302 22 92 4 2 300 842 544 Aphanomyces euteiches cDNA blastn 10300 398 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25082475 25082475 PRJNA879067_P_NODE_91980_length_291_cov_1.412844_g88494_i0 PRJNA879067 91980 291 1.412844 4.11137604 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 399 8.359999999999999e-107   NTclustered gi|695467766|ref|XM_009541409.1| 67593 g88494 i0 92.096 87.2096219931271 291 12 100 6 1 291 294 15 Phytophthora sojae hypothetical protein mRNA blastn 25378 399 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
27632059 27632059 PRJNA879067_P_NODE_57904_length_464_cov_2.355499_g54419_i0 PRJNA879067 57904 464 2.355499 10.92951536 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 105 1.98e-24   NR KAL0589772.1 65357 g54419 i0 62.4 9.75646551724138 85 29 53 1 439 194 195 279 KAL0589772.1 hypothetical protein ABG067_002321 [Albugo candida] diamond 4527 106 0.990566037735849 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
30663579 30663579 PRJNA879067_P_NODE_66033_length_410_cov_7.237389_g62548_i0 PRJNA879067 66033 410 7.237389 29.6732949 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 114 7.07e-30   NR KAG3117548.1 53986 g62548 i0 60.7 2.31951219512195 89 35 65.1 0 328 62 1 89 KAG3117548.1 hypothetical protein PI125_g3667 [Phytophthora idaei] diamond 951 114 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora idaei
30687064 30687064 PRJNA879067_P_NODE_30373_length_758_cov_7.067153_g27059_i0 PRJNA879067 30373 758 7.067153 53.56901974 Aphanomyces cochlioides 112091 SAR_Eukaryotes SAR_Eukaryotes 348 3.7599999999999996e-118   NR KAG9406681.1 112091 g27059 i0 72.3 2.93667546174142 242 59 93.4 4 709 2 7 246 KAG9406681.1 NUAK SNF1-like kinase 1 [Aphanomyces cochlioides] diamond 2226 348 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces cochlioides
31160760 31160760 PRJNA879067_P_NODE_80115_length_338_cov_2.679245_g76629_i0 PRJNA879067 80115 338 2.679245 9.0558481 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 55.1 4.53e-7   NR DAZ99657.1 4803 g76629 i0 49 1.32248520710059 51 26 45.3 0 223 71 47 97 DAZ99657.1 TPA: hypothetical protein N0F65_001894 [Lagenidium giganteum] diamond 447 55.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
31888445 31888445 PRJNA879067_P_NODE_49557_length_528_cov_3.903297_g46077_i0 PRJNA879067 49557 528 3.903297 20.60940816 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 214 1.1999999999999998e-67   NR KAF0687129.1 120398 g46077 i0 79.1 0.789772727272727 139 25 77.8 3 38 448 37 173 KAF0687129.1 hypothetical protein As57867_021032 [Aphanomyces stellatus] diamond 417 214 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;