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contig_metadata

33 rows where bioproject = "PRJNA879067" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879067 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
855024 855024 PRJNA879067_P_NODE_39361_length_630_cov_10.402154_g35917_i0 PRJNA879067 39361 630 10.402154 65.5335702 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.017   NTclustered gi|1557394408|emb|LR031564.1| 45931 g35917 i0 96.875 0.0507936507936508 32 1 5 0 599 630 55 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3404565 3404565 PRJNA879067_P_NODE_104323_length_250_cov_0.870056_g100837_i0 PRJNA879067 104323 250 0.870056 2.17514 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.023   NTclustered gi|1557394408|emb|LR031564.1| 45931 g100837 i0 100 0.112 28 0 11 0 223 250 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3404649 3404649 PRJNA879067_P_NODE_108123_length_245_cov_0.895349_g104637_i0 PRJNA879067 108123 245 0.895349 2.19360505 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 4.75e-4   NTclustered gi|687022680|emb|LM525594.1| 174720 g104637 i0 94.737 0.155102040816327 38 1 15 1 147 183 46254 46217 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000028 blastn 38 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
3406390 3406390 PRJNA879067_P_NODE_59683_length_451_cov_6.074074_g56198_i0 PRJNA879067 59683 451 6.074074 27.39407374 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.012   NTclustered gi|1557394408|emb|LR031564.1| 45931 g56198 i0 100 0.0643015521064302 29 0 6 0 423 451 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
3406798 3406798 PRJNA879067_P_NODE_74123_length_366_cov_3.576792_g70638_i0 PRJNA879067 74123 366 3.576792 13.09105872 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.035   NTclustered gi|1557394408|emb|LR031564.1| 45931 g70638 i0 100 0.0765027322404372 28 0 8 0 339 366 51 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4683875 4683875 PRJNA879067_P_NODE_57464_length_467_cov_2.893401_g53979_i0 PRJNA879067 57464 467 2.893401 13.51218267 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.045   NTclustered gi|1557394408|emb|LR031564.1| 45931 g53979 i0 100 0.0599571734475375 28 0 6 0 440 467 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
4684159 4684159 PRJNA879067_P_NODE_67204_length_403_cov_7.303030_g63719_i0 PRJNA879067 67204 403 7.30303 29.4312109 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.039   NTclustered gi|1557394408|emb|LR031564.1| 45931 g63719 i0 100 0.0694789081885856 28 0 7 0 376 403 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
5957183 5957183 PRJNA879067_P_NODE_111305_length_240_cov_2.173653_g107819_i0 PRJNA879067 111305 240 2.173653 5.2167672 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.022   NTclustered gi|1557394408|emb|LR031564.1| 45931 g107819 i0 100 0.116666666666667 28 0 12 0 213 240 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
5959424 5959424 PRJNA879067_P_NODE_81765_length_331_cov_3.135659_g78279_i0 PRJNA879067 81765 331 3.135659 10.37903129 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.009   NTclustered gi|1557394408|emb|LR031564.1| 45931 g78279 i0 100 0.0876132930513595 29 0 9 0 303 331 52 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8507621 8507621 PRJNA879067_P_NODE_31307_length_742_cov_6.194320_g27967_i0 PRJNA879067 31307 742 6.19432 45.9618544 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.021   NTclustered gi|1557394408|emb|LR031564.1| 45931 g27967 i0 100 0.0390835579514825 29 0 4 0 714 742 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8509343 8509343 PRJNA879067_P_NODE_93027_length_287_cov_1.495327_g89541_i0 PRJNA879067 93027 287 1.495327 4.29158849 Syphacia obvelata 412127 Nematoda Nematoda 475 1.3299999999999996e-129   NTclustered gi|264685683|dbj|AB500175.1| 412127 g89541 i0 100 86.198606271777 257 0 90 0 31 287 12 268 Syphacia obvelata gene for 28S ribosomal RNA, partial sequence, isolate: SobvTRMmus blastn 24739 475 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Syphacia Syphacia obvelata
8891694 8891694 PRJNA879067_P_NODE_111487_length_237_cov_2.036585_g108001_i0 PRJNA879067 111487 237 2.036585 4.82670645 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g108001 i0 97.059 0.270042194092827 34 0 14 1 205 237 51 18 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 64 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
10167954 10167954 PRJNA879067_P_NODE_95828_length_277_cov_2.181373_g92342_i0 PRJNA879067 95828 277 2.181373 6.04240321 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g92342 i0 97.059 0.231046931407942 34 0 12 1 1 33 18 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 64 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12334040 12334040 PRJNA879067_P_NODE_38310_length_643_cov_5.068421_g34880_i0 PRJNA879067 38310 643 5.068421 32.58994703 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.005   NTclustered gi|1557394408|emb|LR031564.1| 45931 g34880 i0 97.059 0.0528771384136858 34 0 5 1 610 643 50 18 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
13993109 13993109 PRJNA879067_P_NODE_78791_length_344_cov_2.284133_g75305_i0 PRJNA879067 78791 344 2.284133 7.85741752 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.009   NTclustered gi|1557394408|emb|LR031564.1| 45931 g75305 i0 96.97 0.180232558139535 33 0 9 1 313 344 51 19 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 62 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14883734 14883734 PRJNA879067_P_NODE_65532_length_413_cov_4.250000_g62047_i0 PRJNA879067 65532 413 4.25 17.5525 Syphacia obvelata 412127 Nematoda Nematoda 758 0   NTclustered gi|264685683|dbj|AB500175.1| 412127 g62047 i0 100 38.6634382566586 410 0 99 0 1 410 299 708 Syphacia obvelata gene for 28S ribosomal RNA, partial sequence, isolate: SobvTRMmus blastn 15968 758 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Syphacia Syphacia obvelata
16158939 16158939 PRJNA879067_P_NODE_85653_length_315_cov_2.471074_g82167_i0 PRJNA879067 85653 315 2.471074 7.7838831 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g82167 i0 100 0.0888888888888889 28 0 9 0 288 315 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17434456 17434456 PRJNA879067_P_NODE_86374_length_312_cov_2.794979_g82888_i0 PRJNA879067 86374 312 2.794979 8.72033448 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.029   NTclustered gi|1557394408|emb|LR031564.1| 45931 g82888 i0 100 0.0897435897435897 28 0 9 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
18707291 18707291 PRJNA879067_P_NODE_71435_length_380_cov_3.843648_g67950_i0 PRJNA879067 71435 380 3.843648 14.6058624 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.003   NTclustered gi|1557394408|emb|LR031564.1| 45931 g67950 i0 100 0.0789473684210526 30 0 8 0 351 380 52 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
19980518 19980518 PRJNA879067_P_NODE_108216_length_244_cov_1.801170_g104730_i0 PRJNA879067 108216 244 1.80117 4.3948548 Strongyloides ratti 34506 Nematoda Nematoda 58.4 4.73e-4   NTclustered gi|1376150623|ref|XM_024643726.1| 34506 g104730 i0 97.143 0.14344262295082 35 0 14 1 81 115 530 497 Strongyloides ratti Hypothetical protein (SRAE_2000480000), partial mRNA blastn 35 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
19982884 19982884 PRJNA879067_P_NODE_84036_length_322_cov_1.678715_g80550_i0 PRJNA879067 84036 322 1.678715 5.4054623 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.002   NTclustered gi|1557394408|emb|LR031564.1| 45931 g80550 i0 97.059 0.105590062111801 34 0 11 1 289 322 50 18 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
21258565 21258565 PRJNA879067_P_NODE_95677_length_278_cov_1.258537_g92191_i0 PRJNA879067 95677 278 1.258537 3.49873286 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g92191 i0 100 0.100719424460432 28 0 10 0 251 278 51 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
21258632 21258632 PRJNA879067_P_NODE_9857_length_1573_cov_25.150667_g7766_i0 PRJNA879067 9857 1573 25.150667 395.61999191 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.045   NTclustered gi|1557394408|emb|LR031564.1| 45931 g7766 i0 100 0.0184361093452003 29 0 2 0 1545 1573 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
22533067 22533067 PRJNA879067_P_NODE_88558_length_304_cov_1.484848_g85072_i0 PRJNA879067 88558 304 1.484848 4.51393792 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.008   NTclustered gi|1557394408|emb|LR031564.1| 45931 g85072 i0 100 0.0953947368421053 29 0 10 0 276 304 51 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
23808661 23808661 PRJNA879067_P_NODE_95199_length_279_cov_3.548544_g91713_i0 PRJNA879067 95199 279 3.548544 9.90043776 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g91713 i0 100 0.100358422939068 28 0 10 0 252 279 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25082585 25082585 PRJNA879067_P_NODE_96800_length_274_cov_1.393035_g93314_i0 PRJNA879067 96800 274 1.393035 3.8169159 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.025   NTclustered gi|1557394408|emb|LR031564.1| 45931 g93314 i0 100 0.102189781021898 28 0 10 0 247 274 51 24 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25082604 25082604 PRJNA879067_P_NODE_97780_length_270_cov_2.345178_g94294_i0 PRJNA879067 97780 270 2.345178 6.3319806 Pratylenchus vulnus 45931 Nematoda Nematoda 58.4 5.32e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g94294 i0 97.143 0.12962962962963 35 0 13 1 1 35 18 51 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 35 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
28223699 28223699 PRJNA879067_P_NODE_62626_length_432_cov_1.807799_g59141_i0 PRJNA879067 62626 432 1.807799 7.80969168 Mesorhabditis spiculigera 96644 Nematoda Nematoda 118 9.63e-32   NR CAJ0559171.1 96644 g59141 i0 71.3 0.652777777777778 94 20 64.6 2 368 90 1 88 CAJ0559171.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 282 118 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
28508078 28508078 PRJNA879067_P_NODE_54187_length_491_cov_4.090909_g50702_i0 PRJNA879067 54187 491 4.090909 20.08636319 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 107 2.32e-26   NR CAD5224984.1 6326 g50702 i0 47.7 1.60081466395112 130 63 77.6 3 386 6 4 131 CAD5224984.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 786 107 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28768554 28768554 PRJNA879067_P_NODE_32047_length_730_cov_2.141553_g28700_i0 PRJNA879067 32047 730 2.141553 15.6333369 Nematoda 6231 Nematoda Nematoda 48.5 0.015   NR VDK17708.1 6269 g28700 i0 38.5 0.908219178082192 52 29 20.1 1 167 313 209 260 VDK17708.1 unnamed protein product [Anisakis simplex] diamond 663 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
30971674 30971674 PRJNA879067_P_NODE_41714_length_604_cov_2.491525_g38261_i0 PRJNA879067 41714 604 2.491525 15.048811 Anisakis simplex 6269 Nematoda Nematoda 70.9 1.85e-10   NR VDK42199.1 6269 g38261 i0 45.9 0.605960264900662 61 33 30.3 0 3 185 94 154 VDK42199.1 unnamed protein product [Anisakis simplex] diamond 366 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
31137241 31137241 PRJNA879067_P_NODE_54535_length_488_cov_7.296386_g51050_i0 PRJNA879067 54535 488 7.296386 35.60636368 Trichinella 6333 Nematoda Nematoda 57.4 3.5e-6   NR KRY46971.1 45882 g51050 i0 50.9 0.700819672131147 57 28 35 0 11 181 459 515 KRY46971.1 Solute carrier family 2, facilitated glucose transporter member 1, partial [Trichinella britovi] diamond 342 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
32899281 32899281 PRJNA879067_P_NODE_106480_length_247_cov_0.885057_g102994_i0 PRJNA879067 106480 247 0.885057 2.18609079 Haemonchus contortus 6289 Nematoda Nematoda 156 3.25e-42   NR XGW17758.1 6289 g102994 i0 100 2.95141700404858 81 0 98.4 0 245 3 741 821 XGW17758.1 hypothetical protein V3C99_002390 [Haemonchus contortus] diamond 729 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;