RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879067", tax_phylum = "Hofneiviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Hofneiviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879067 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5957087 5957087 PRJNA879067_P_NODE_106405_length_247_cov_0.885057_g102919_i0 PRJNA879067 106405 247 0.885057 2.18609079 Inoviridae sp. 2219103 Viruses Viruses 102 2.19e-17   NTclustered gi|2906143964|gb|PQ646075.1| 2219103 g102919 i0 89.286 0.526315789473684 84 6 33 3 62 143 883 965 MAG: Inoviridae sp. isolate k127_2965060 genomic sequence blastn 130 102 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Inoviridae sp.
5957265 5957265 PRJNA879067_P_NODE_12845_length_1349_cov_5.006270_g10430_i0 PRJNA879067 12845 1349 5.00627 67.5345823 Inoviridae sp. 2219103 Viruses Viruses 1515 0   NTclustered gi|2057891989|tpg|BK051014.1| 2219103 g10430 i0 97.105 1.03854707190511 898 26 94 0 26 923 16574 15677 MAG TPA_asm: Inoviridae sp. isolate ctfkp1, partial genome blastn 1401 1515 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Inoviridae sp.
25079991 25079991 PRJNA879067_P_NODE_112000_length_227_cov_2.051948_g108514_i0 PRJNA879067 112000 227 2.051948 4.65792196 Inoviridae sp. 2219103 Viruses Viruses 368 1.77e-97   NTclustered gi|2057891989|tpg|BK051014.1| 2219103 g108514 i0 99.024 1.03083700440529 205 2 90 0 23 227 5541 5745 MAG TPA_asm: Inoviridae sp. isolate ctfkp1, partial genome blastn 234 368 1 Viruses   Loebvirae Hofneiviricota Faserviricetes Tubulavirales Inoviridae   Inoviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;