RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879067", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Cossaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879067 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13609905 13609905 PRJNA879067_P_NODE_86351_length_312_cov_3.506276_g82865_i0 PRJNA879067 86351 312 3.506276 10.93958112 Parvovirus macaca3116 3117124 Viruses Viruses 54.7 0.008   NTclustered gi|2710391813|tpg|BK066549.1| 3117124 g82865 i0 100 0.753205128205128 29 0 9 0 3 31 1 29 MAG TPA_asm: Parvovirus macaca3116 isolate Parvo3116 genomic sequence blastn 235 54.7 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvovirus macaca3116
19982989 19982989 PRJNA879067_P_NODE_88176_length_305_cov_2.392241_g84690_i0 PRJNA879067 88176 305 2.392241 7.29633505 Alphapapillomavirus 2 337039 Viruses Viruses 510 3.9e-140   NTclustered gi|339639364|emb|FN547152.2| 673323 g84690 i0 100 10.1311475409836 276 0 90 0 1 276 7489 7764 Human papillomavirus type 125 complete genome, strain SIBX9 blastn 3090 510 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 2
23807628 23807628 PRJNA879067_P_NODE_55499_length_481_cov_6.781863_g52014_i0 PRJNA879067 55499 481 6.781863 32.62076103 Parvoviridae sp. 1940570 Viruses Viruses 499 1.3899999999999999e-136   NTclustered gi|2056961609|tpg|BK022927.1| 1940570 g52014 i0 86.652 0.95010395010395 457 54 95 3 1 456 1813 2263 MAG TPA_asm: Parvoviridae sp. isolate ctSOP1, partial genome blastn 457 499 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;