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contig_metadata

31 rows where bioproject = "PRJNA879067", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 31 ✖

tax_kingdom 1

  • Pseudomonadati · 31 ✖

bioproject 1

  • PRJNA879067 · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2131221 2131221 PRJNA879067_P_NODE_71662_length_379_cov_2.869281_g68177_i0 PRJNA879067 71662 379 2.869281 10.87457499 Myxococcota bacterium 2818507 Bacteria Bacteria 95.9 1.03e-20   NR HEY8495080.1 2818507 g68177 i0 74.3 0.585751978891821 74 19 58.6 0 152 373 1 74 HEY8495080.1 decarboxylating 6-phosphogluconate dehydrogenase [Myxococcota bacterium] diamond 222 95.9 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
3791224 3791224 PRJNA879067_P_NODE_85803_length_315_cov_1.123967_g82317_i0 PRJNA879067 85803 315 1.123967 3.54049605 Polyangia bacterium 3058050 Bacteria Bacteria 138 2.7599999999999996e-35   NR HEX2574262.1 3058050 g82317 i0 90.9 0.942857142857143 99 6 91.4 1 290 3 499 597 HEX2574262.1 tetratricopeptide repeat protein [Polyangia bacterium] diamond 297 138 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
4684825 4684825 PRJNA879067_P_NODE_92704_length_288_cov_2.418605_g89218_i0 PRJNA879067 92704 288 2.418605 6.9655824 Stigmatella aurantiaca 41 Bacteria Bacteria 52.8 0.027   NTclustered gi|309390350|gb|CP002271.1| 378806 g89218 i0 100 0.0972222222222222 28 0 10 0 82 109 7922904 7922877 Stigmatella aurantiaca DW4/3-1, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
5957359 5957359 PRJNA879067_P_NODE_15025_length_1223_cov_15.229565_g12411_i0 PRJNA879067 15025 1223 15.229565 186.25757995 Myxococcales bacterium 2026763 Bacteria Bacteria 197 1.86e-58   NR MEA2746105.1 2026763 g12411 i0 68.9 0.662305805396566 135 42 33.1 0 746 342 1 135 MEA2746105.1 hypothetical protein [Myxococcales bacterium] diamond 810 197 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
9783455 9783455 PRJNA879067_P_NODE_60668_length_445_cov_2.174731_g57183_i0 PRJNA879067 60668 445 2.174731 9.67755295 Pseudomonadati 3379134 Bacteria Bacteria 242 1.22e-77   NR MDP1761396.1 2026735 g57183 i0 84.9 3.74831460674157 139 21 93.7 0 445 29 73 211 MDP1761396.1 cysteine desulfurase family protein [Deltaproteobacteria bacterium] diamond 1668 242 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
14883456 14883456 PRJNA879067_P_NODE_56032_length_477_cov_5.490099_g52547_i0 PRJNA879067 56032 477 5.490099 26.18777223 Pseudomonadati 3379134 Bacteria Bacteria 256 1.49e-78   NR MEQ9620286.1 2026735 g52547 i0 92.4 8.29559748427673 132 10 83 0 445 50 30 161 MEQ9620286.1 elongation factor G [Deltaproteobacteria bacterium] diamond 3957 258 0.992248062015504 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
15266670 15266670 PRJNA879067_P_NODE_108872_length_244_cov_0.900585_g105386_i0 PRJNA879067 108872 244 0.900585 2.1974274 Stigmatella 40 Bacteria Bacteria 326 1.17e-84   NTclustered gi|507148216|ref|NR_103023.1| 41 g105386 i0 90.947 213.356557377049 243 20 99 2 2 244 1443 1203 Stigmatella aurantiaca strain DW4/3-1 23S ribosomal RNA gene, complete sequence blastn 52059 326 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Stigmatella Stigmatella aurantiaca
16158163 16158163 PRJNA879067_P_NODE_56493_length_474_cov_1.740648_g53008_i0 PRJNA879067 56493 474 1.740648 8.25067152 Kofleriaceae bacterium 2212474 Bacteria Bacteria 246 6.17e-77   NR NVB76903.1 2212474 g53008 i0 77.4 1.94303797468354 155 29 94.3 2 447 1 5 159 NVB76903.1 hypothetical protein [Kofleriaceae bacterium] diamond 921 246 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
22532292 22532292 PRJNA879067_P_NODE_58858_length_457_cov_3.309896_g55373_i0 PRJNA879067 58858 457 3.309896 15.12622472 Sandaracinus amylolyticus 927083 Bacteria Bacteria 521 2.809999999999999e-143   NTclustered gi|2183633570|gb|CP070225.1| 927083 g55373 i0 89.07 198.588621444201 430 34 94 10 1 428 9676778 9676360 Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence blastn 90755 521 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus amylolyticus
22532940 22532940 PRJNA879067_P_NODE_83638_length_324_cov_1.167331_g80152_i0 PRJNA879067 83638 324 1.167331 3.78215244 Myxococcus stipitatus 83455 Bacteria Bacteria 503 6.99e-138   NTclustered gi|2722781719|gb|CP102770.1| 83455 g80152 i0 97.619 377.027777777778 294 5 90 2 32 324 5052275 5052567 Myxococcus stipitatus strain YRE12 chromosome, complete genome blastn 122157 503 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus stipitatus
26865707 26865707 PRJNA879067_P_NODE_65161_length_416_cov_1.422741_g61676_i0 PRJNA879067 65161 416 1.422741 5.91860256 Polyangiaceae bacterium 2268199 Bacteria Bacteria 64.3 7.06e-9   NR HEY6459990.1 2268199 g61676 i0 63.8 0.338942307692308 47 17 33.9 0 410 270 630 676 HEY6459990.1 discoidin domain-containing protein [Polyangiaceae bacterium] diamond 141 64.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27244877 27244877 PRJNA879067_P_NODE_68823_length_395_cov_1.332298_g65338_i0 PRJNA879067 68823 395 1.332298 5.2625771 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 181 7.0899999999999995e-56   NR MBP6741803.1 2026735 g65338 i0 92.8 0.843037974683544 111 6 84.3 1 334 2 1 109 MBP6741803.1 dephospho-CoA kinase [Deltaproteobacteria bacterium] diamond 333 181 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27529211 27529211 PRJNA879067_P_NODE_95543_length_278_cov_2.004878_g92057_i0 PRJNA879067 95543 278 2.004878 5.57356084 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.5 0.0247   NR HBZ72276.1 2026735 g92057 i0 40.7 0.982014388489209 91 49 93.9 2 2 262 17 106 HBZ72276.1 molybdate ABC transporter permease subunit [Deltaproteobacteria bacterium] diamond 273 43.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
27781928 27781928 PRJNA879067_P_NODE_100084_length_262_cov_1.529101_g96598_i0 PRJNA879067 100084 262 1.529101 4.00624462 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 126 2.89e-35   NR MBI2485998.1 2026735 g96598 i0 65.1 0.984732824427481 86 29 98.5 1 2 259 22 106 MBI2485998.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 258 126 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28160904 28160904 PRJNA879067_P_NODE_8945_length_1663_cov_17.703145_g6961_i0 PRJNA879067 8945 1663 17.703145 294.40330135 Bradymonadia bacterium 3121696 Bacteria Bacteria 489 4.0699999999999987e-165   NR MFN3202387.1 3121696 g6961 i0 51.6 1.89236319903788 527 237 93.6 9 1589 33 3 519 MFN3202387.1 leucyl aminopeptidase family protein [Bradymonadia bacterium] diamond 3147 489 1 Bacteria   Pseudomonadati Myxococcota Bradymonadia       Bradymonadia bacterium
28223696 28223696 PRJNA879067_P_NODE_37886_length_648_cov_8.246957_g34461_i0 PRJNA879067 37886 648 8.246957 53.44028136 Polyangia bacterium 3058050 Bacteria Bacteria 314 3.949999999999999e-105   NR MFO0572486.1 3058050 g34461 i0 84.4 0.828703703703704 179 28 82.9 0 561 25 55 233 MFO0572486.1 protocatechuate 3,4-dioxygenase [Polyangia bacterium] diamond 537 314 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
28886782 28886782 PRJNA879067_P_NODE_27088_length_821_cov_16.168449_g23847_i0 PRJNA879067 27088 821 16.168449 132.74296629 Polyangiales bacterium 3034171 Bacteria Bacteria 233 2.51e-72   NR MFO0694577.1 3034171 g23847 i0 54.9 0.825822168087698 226 102 82.6 0 2 679 63 288 MFO0694577.1 hypothetical protein [Polyangiales bacterium] diamond 678 233 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
28886794 28886794 PRJNA879067_P_NODE_58168_length_462_cov_2.958869_g54683_i0 PRJNA879067 58168 462 2.958869 13.66997478 Myxococcales bacterium 2026763 Bacteria Bacteria 232 3.739999999999999e-68   NR MBL8945969.1 2026763 g54683 i0 84.4 0.876623376623377 135 21 87.7 0 25 429 797 931 MBL8945969.1 lamin tail domain-containing protein [Myxococcales bacterium] diamond 405 232 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29108028 29108028 PRJNA879067_P_NODE_99628_length_264_cov_1.130890_g96142_i0 PRJNA879067 99628 264 1.13089 2.9855496 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 49.3 2.13e-4   NR MBS2013440.1 2026735 g96142 i0 36.1 0.818181818181818 72 44 81.8 1 4 219 213 282 MBS2013440.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 216 49.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29202784 29202784 PRJNA879067_P_NODE_55409_length_482_cov_3.273839_g51924_i0 PRJNA879067 55409 482 3.273839 15.77990398 Polyangiaceae bacterium 2268199 Bacteria Bacteria 188 1.16e-53   NR HLK36952.1 2268199 g51924 i0 71.4 0.827800829875519 133 38 82.8 0 431 33 277 409 HLK36952.1 asparagine synthase-related protein [Polyangiaceae bacterium] diamond 399 188 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
29486559 29486559 PRJNA879067_P_NODE_105570_length_248_cov_0.880000_g102084_i0 PRJNA879067 105570 248 0.88 2.1824 Archangium sp. 1872627 Bacteria Bacteria 137 2.84e-36   NR MBL8941075.1 1872627 g102084 i0 85.4 0.991935483870968 82 12 99.2 0 248 3 308 389 MBL8941075.1 DASS family sodium-coupled anion symporter [Archangium sp.] diamond 246 137 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
29707403 29707403 PRJNA879067_P_NODE_75890_length_357_cov_5.112676_g72404_i0 PRJNA879067 75890 357 5.1126760000000004 18.25225332 Myxococcota bacterium 2818507 Bacteria Bacteria 50.4 1.83e-4   NR MEM7496211.1 2818507 g72404 i0 39.7 1.59663865546218 63 37 52.1 1 2 187 18 80 MEM7496211.1 ankyrin repeat domain-containing protein [Myxococcota bacterium] diamond 570 50.4 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30529119 30529119 PRJNA879067_P_NODE_15833_length_1183_cov_2.585586_g13150_i0 PRJNA879067 15833 1183 2.585586 30.58748238 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 87.8 2.98e-15   NR MCC6997450.1 2026735 g13150 i0 34.4 0.63905325443787 189 78 47.9 4 1145 579 16 158 MCC6997450.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 756 87.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30687072 30687072 PRJNA879067_P_NODE_6193_length_2024_cov_4.148129_g4598_i0 PRJNA879067 6193 2024 4.148129 83.95813096 Kofleriaceae bacterium 2212474 Bacteria Bacteria 483 1.95e-158   NR HEX3476383.1 2212474 g4598 i0 51.1 9.04150197628459 548 227 81.2 2 375 2018 40 546 HEX3476383.1 hypothetical protein [Kofleriaceae bacterium] diamond 18300 483 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31864737 31864737 PRJNA879067_P_NODE_92157_length_290_cov_2.055300_g88671_i0 PRJNA879067 92157 290 2.0553 5.96037 Pseudomonadati 3379134 Bacteria Bacteria 150 1.3399999999999996e-43   NR WP_207048363.1 35 g88671 i0 85.2 6.37241379310345 88 13 91 0 266 3 12 99 WP_207048363.1 hypothetical protein [Corallococcus macrosporus] diamond 1848 150 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus macrosporus
32458256 32458256 PRJNA879067_P_NODE_96099_length_276_cov_2.275862_g92613_i0 PRJNA879067 96099 276 2.275862 6.28137912 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.0145   NR TVQ92167.1 2026735 g92613 i0 30.5 0.891304347826087 82 41 87 4 18 257 208 275 TVQ92167.1 MAG: hypothetical protein EA397_07345 [Deltaproteobacteria bacterium] diamond 246 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32521689 32521689 PRJNA879067_P_NODE_39179_length_632_cov_12.960644_g35738_i0 PRJNA879067 39179 632 12.960644 81.91127008 Anaeromyxobacteraceae bacterium 2510643 Bacteria Bacteria 85.9 3.01e-16   NR HUL58295.1 2510643 g35738 i0 68.5 0.256329113924051 54 17 25.6 0 630 469 216 269 HUL58295.1 peptidoglycan recognition family protein [Anaeromyxobacteraceae bacterium] diamond 162 85.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae   Anaeromyxobacteraceae bacterium
32616079 32616079 PRJNA879067_P_NODE_72100_length_377_cov_1.148026_g68615_i0 PRJNA879067 72100 377 1.148026 4.32805802 Polyangiales bacterium 3034171 Bacteria Bacteria 68.6 1.41e-10   NR HEX6239879.1 3034171 g68615 i0 79.5 0.310344827586207 39 8 31 0 353 237 378 416 HEX6239879.1 ATP-dependent 6-phosphofructokinase [Polyangiales bacterium] diamond 117 68.6 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
32616086 32616086 PRJNA879067_P_NODE_90860_length_295_cov_1.585586_g87374_i0 PRJNA879067 90860 295 1.585586 4.6774787 Polyangia bacterium 3058050 Bacteria Bacteria 45.4 0.00759   NR HXU00582.1 3058050 g87374 i0 50 0.406779661016949 40 20 40.7 0 101 220 422 461 HXU00582.1 kelch repeat-containing protein [Polyangia bacterium] diamond 120 45.4 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
32804927 32804927 PRJNA879067_P_NODE_81840_length_331_cov_1.887597_g78354_i0 PRJNA879067 81840 331 1.887597 6.24794607 Myxococcales bacterium 2026763 Bacteria Bacteria 43.9 0.0388   NR MCA9547722.1 2026763 g78354 i0 36.8 1.37764350453172 76 34 66.2 3 7 225 367 431 MCA9547722.1 sulfatase [Myxococcales bacterium] diamond 456 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
32836357 32836357 PRJNA879067_P_NODE_105540_length_248_cov_0.880000_g102054_i0 PRJNA879067 105540 248 0.88 2.1824 Polyangiaceae bacterium 2268199 Bacteria Bacteria 125 8.649999999999999e-32   NR HEY2516836.1 2268199 g102054 i0 79.3 2.9758064516129 82 17 99.2 0 1 246 158 239 HEY2516836.1 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase [Polyangiaceae bacterium] diamond 738 125 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;