RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA879067", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA879067 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6342913 6342913 PRJNA879067_P_NODE_33085_length_713_cov_10.631250_g29718_i0 PRJNA879067 33085 713 10.63125 75.8008125 Echinodermata 7586 Echinodermata other_Eukaryota 56.5 0.006   NTclustered gi|1944873094|ref|XM_038200386.1| 46514 g29718 i0 100 0.180925666199158 30 0 4 0 387 416 4241 4212 PREDICTED: Patiria miniata ubiquitin-protein ligase E3C-like (LOC119728232), mRNA blastn 129 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
21256364 21256364 PRJNA879067_P_NODE_20717_length_986_cov_18.267251_g17759_i0 PRJNA879067 20717 986 18.267251 180.11509486 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 65.8 1.28e-5   NTclustered gi|2037985515|ref|XM_041605431.1| 7654 g17759 i0 93.333 0.0456389452332657 45 1 4 2 443 486 1430 1473 PREDICTED: Lytechinus variegatus parkin coregulated gene protein homolog (LOC121412655), mRNA blastn 45 65.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;