RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA879067", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA879067 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17433035 17433035 PRJNA879067_P_NODE_35514_length_679_cov_5.480198_g32112_i0 PRJNA879067 35514 679 5.480198 37.21054442 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 238 1.17e-75   NR CEO98386.1 37360 g32112 i0 66.8 1.53313696612666 199 62 87.9 1 677 81 8 202 CEO98386.1 hypothetical protein PBRA_006500 [Plasmodiophora brassicae] diamond 1041 238 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
17434291 17434291 PRJNA879067_P_NODE_80134_length_338_cov_2.449057_g76648_i0 PRJNA879067 80134 338 2.449057 8.27781266 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 176 1.81e-39   NTclustered gi|1031965310|gb|KX011115.1| 37360 g76648 i0 85.143 50.7692307692308 175 22 51 3 1 171 7725 7899 Plasmodiophora brassicae isolate AT 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17160 176 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29644274 29644274 PRJNA879067_P_NODE_46210_length_558_cov_2.921649_g42741_i0 PRJNA879067 46210 558 2.921649 16.30280142 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 88.2 1.72e-16   NR SPR02116.1 37360 g42741 i0 35 0.752688172043011 140 87 74.2 3 553 140 4002 4139 SPR02116.1 unnamed protein product [Plasmodiophora brassicae] diamond 420 88.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;