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contig_metadata

26 rows where bioproject = "PRJNA879067", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 26 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 26 ✖

bioproject 1

  • PRJNA879067 · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2129718 2129718 PRJNA879067_P_NODE_23242_length_911_cov_3.874702_g20159_i0 PRJNA879067 23242 911 3.874702 35.29853522 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 379 5.45e-126   NR HEV8541407.1 2499141 g20159 i0 64.7 0.987925356750823 300 104 98.1 2 16 909 120 419 HEV8541407.1 ATP-binding protein [Verrucomicrobiia bacterium] diamond 900 379 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
5959677 5959677 PRJNA879067_P_NODE_91965_length_291_cov_1.412844_g88479_i0 PRJNA879067 91965 291 1.412844 4.11137604 Pseudomonadati 3379134 Bacteria Bacteria 94.4 1.75e-20   NR PYJ06183.1 2026799 g88479 i0 58 3.69072164948454 100 39 100 1 1 291 102 201 PYJ06183.1 MAG: hypothetical protein DME25_07070, partial [Verrucomicrobiota bacterium] diamond 1074 94.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
7616961 7616961 PRJNA879067_P_NODE_36646_length_663_cov_14.730508_g33230_i0 PRJNA879067 36646 663 14.730508 97.66326804 Prosthecobacter sp. 1965333 Bacteria Bacteria 95.5 1.05e-21   NR WP_395732677.1 1965333 g33230 i0 97.9 0.217194570135747 48 1 21.7 0 26 169 36 83 WP_395732677.1 helix-turn-helix domain-containing protein [Prosthecobacter sp.] diamond 144 95.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
9784097 9784097 PRJNA879067_P_NODE_84988_length_318_cov_1.775510_g81502_i0 PRJNA879067 84988 318 1.77551 5.6461218 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 359 1.57e-94   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g81502 i0 87.066 1.33018867924528 317 41 99 0 2 318 446523 446207 Luteolibacter sp. Populi chromosome, complete genome blastn 423 359 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
9784277 9784277 PRJNA879067_P_NODE_92128_length_290_cov_2.571429_g88642_i0 PRJNA879067 92128 290 2.571429 7.4571441 Actomonas aquatica 2866162 Bacteria Bacteria 52.8 0.027   NTclustered gi|2647674565|gb|CP139781.1| 2866162 g88642 i0 100 0.096551724137931 28 0 10 0 262 289 1509966 1509993 Actomonas aquatica strain WL0086 chromosome, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
11059167 11059167 PRJNA879067_P_NODE_57109_length_469_cov_9.007576_g53624_i0 PRJNA879067 57109 469 9.007576 42.24553144 Opitutales bacterium 2026772 Bacteria Bacteria 132 1.81e-33   NR HNX05049.1 2026772 g53624 i0 63.4 1.7910447761194 93 34 59.5 0 143 421 7 99 HNX05049.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Opitutales bacterium] diamond 840 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
18705379 18705379 PRJNA879067_P_NODE_11695_length_1427_cov_5.536189_g9402_i0 PRJNA879067 11695 1427 5.536189 79.00141703 Limisphaerales bacterium 2052186 Bacteria Bacteria 69.3 6.22e-10   NR MFN7141538.1 2052186 g9402 i0 48.9 0.279607568325158 133 57 26.9 5 1272 889 25 151 MFN7141538.1 hypothetical protein [Limisphaerales bacterium] diamond 399 69.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales     Limisphaerales bacterium
19090406 19090406 PRJNA879067_P_NODE_29155_length_779_cov_16.766289_g25870_i0 PRJNA879067 29155 779 16.766289 130.60939131 root 1 Root_unresolved Root_unresolved 54.7 0.022   NTclustered gi|226525317|gb|FJ872374.1| 156588 g25870 i0 100 0.0744544287548139 29 0 4 0 347 375 1792 1764 Uncultured Verrucomicrobia bacterium clone 184 genomic sequence blastn 58 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
19981675 19981675 PRJNA879067_P_NODE_40476_length_618_cov_2.467890_g37028_i0 PRJNA879067 40476 618 2.46789 15.2515602 Termitidicoccus mucosus 1184151 Bacteria Bacteria 248 7.28e-61   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g37028 i0 85.714 5.05663430420712 238 31 38 3 356 591 4295974 4295738 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 3125 248 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
21256338 21256338 PRJNA879067_P_NODE_19997_length_1009_cov_33.317308_g17076_i0 PRJNA879067 19997 1009 33.317308 336.17163772 Prosthecobacter sp. 1965333 Bacteria Bacteria 599 1.3399999999999995e-209   NR MDB6005009.1 1965333 g17076 i0 92.1 3.74925668979187 315 25 93.7 0 32 976 369 683 MDB6005009.1 glycine dehydrogenase [Prosthecobacter sp.] diamond 3783 599 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
22533091 22533091 PRJNA879067_P_NODE_89578_length_300_cov_1.696035_g86092_i0 PRJNA879067 89578 300 1.696035 5.088105 Verrucomicrobium spinosum 2736 Bacteria Bacteria 392 1.4499999999999994e-104   NTclustered gi|12583973|gb|AF245377.1| 240016 g86092 i0 90.604 141.846666666667 298 25 99 2 5 300 268 564 Verrucomicrobium spinosum 23S ribosomal RNA gene, partial sequence blastn 42554 392 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Verrucomicrobium Verrucomicrobium spinosum
26643594 26643594 PRJNA879067_P_NODE_109461_length_243_cov_0.905882_g105975_i0 PRJNA879067 109461 243 0.905882 2.20129326 Opitutales bacterium 2026772 Bacteria Bacteria 126 1.06e-35   NR HQU09324.1 2026772 g105975 i0 72.7 1.90123456790123 77 21 95.1 0 12 242 11 87 HQU09324.1 hypothetical protein [Opitutales bacterium] diamond 462 126 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
26738301 26738301 PRJNA879067_P_NODE_45901_length_561_cov_2.692623_g42436_i0 PRJNA879067 45901 561 2.692623 15.10561503 Prosthecobacter sp. 1965333 Bacteria Bacteria 189 7.340000000000001e-59   NR WP_294381935.1 1965333 g42436 i0 92 1.06951871657754 100 8 53.5 0 384 85 1 100 WP_294381935.1 winged helix-turn-helix domain-containing protein [Prosthecobacter sp.] diamond 600 189 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
27063269 27063269 PRJNA879067_P_NODE_107242_length_246_cov_0.890173_g103756_i0 PRJNA879067 107242 246 0.890173 2.18982558 Pseudomonadati 3379134 Bacteria Bacteria 70.1 8.66e-12   NR WP_006982489.1 191863 g103756 i0 46.2 8.32926829268293 78 40 95.1 1 239 6 44 119 WP_006982489.1 ABC transporter permease [Chthoniobacter flavus] diamond 2049 70.5 0.994326241134752 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter flavus
27371664 27371664 PRJNA879067_P_NODE_93343_length_286_cov_1.446009_g89857_i0 PRJNA879067 93343 286 1.446009 4.13558574 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 59.7 4.84e-8   NR KAB2644833.1 2026799 g89857 i0 37.1 1.81468531468531 89 33 93.4 1 269 3 2 67 KAB2644833.1 MAG: phytanoyl-CoA dioxygenase family protein [Verrucomicrobiota bacterium] diamond 519 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27939805 27939805 PRJNA879067_P_NODE_55245_length_483_cov_3.834146_g51760_i0 PRJNA879067 55245 483 3.834146 18.51892518 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 73.2 1.21e-11   NR HYV20612.1 2499141 g51760 i0 47.1 0.84472049689441 68 35 41.6 1 202 2 37 104 HYV20612.1 thrombospondin type 3 repeat-containing protein [Verrucomicrobiia bacterium] diamond 408 73.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
27971227 27971227 PRJNA879067_P_NODE_26205_length_841_cov_2.891927_g22990_i0 PRJNA879067 26205 841 2.891927 24.32110607 Terrimicrobium sp. 1965319 Bacteria Bacteria 260 3.84e-76   NR HEY6676457.1 1965319 g22990 i0 84.7 1.07015457788347 150 23 53.5 0 392 841 1 150 HEY6676457.1 ATP-binding protein [Terrimicrobium sp.] diamond 900 260 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.
28445037 28445037 PRJNA879067_P_NODE_35746_length_676_cov_5.187396_g32344_i0 PRJNA879067 35746 676 5.187396 35.06679696 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 397 7.4e-138   NR HVJ56208.1 2832348 g32344 i0 92.3 0.980769230769231 221 17 98.1 0 2 664 44 264 HVJ56208.1 SDR family NAD(P)-dependent oxidoreductase [Terrimicrobiaceae bacterium] diamond 663 397 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
28958298 28958298 PRJNA879067_P_NODE_34588_length_692_cov_12.201939_g31200_i0 PRJNA879067 34588 692 12.201939 84.43741788 PVC group 1783257 Bacteria Bacteria 73.6 5.94e-11   NR MBE7500477.1 2026801 g31200 i0 36.1 2.35404624277457 133 70 53.8 4 182 553 422 548 MBE7500477.1 protein kinase [Verrucomicrobiales bacterium] diamond 1629 73.9 0.995940460081191 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
29108007 29108007 PRJNA879067_P_NODE_28308_length_796_cov_1.441217_g25041_i0 PRJNA879067 28308 796 1.441217 11.47208732 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 345 4.22e-105   NR MBS0647762.1 2026799 g25041 i0 73.9 0.836683417085427 222 43 78 1 623 3 1397 1618 MBS0647762.1 autotransporter domain-containing protein [Verrucomicrobiota bacterium] diamond 666 345 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30474192 30474192 PRJNA879067_P_NODE_35173_length_684_cov_2.310966_g31777_i0 PRJNA879067 35173 684 2.310966 15.80700744 Pseudomonadati 3379134 Bacteria Bacteria 112 1.16e-26   NR MBS0648465.1 2026799 g31777 i0 54.1 0.864035087719298 98 45 43 0 68 361 97 194 MBS0648465.1 50S ribosomal protein L11 methyltransferase [Verrucomicrobiota bacterium] diamond 591 112 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30750458 30750458 PRJNA879067_P_NODE_14774_length_1236_cov_2.645744_g12173_i0 PRJNA879067 14774 1236 2.645744 32.701395840000004 Opitutus sp. 1913982 Bacteria Bacteria 320 2.7999999999999996e-98   NR HYD83789.1 1913982 g12173 i0 45.9 0.941747572815534 388 202 93.4 5 1186 32 1 383 HYD83789.1 choice-of-anchor R domain-containing protein [Opitutus sp.] diamond 1164 320 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
31698805 31698805 PRJNA879067_P_NODE_93617_length_285_cov_1.462264_g90131_i0 PRJNA879067 93617 285 1.462264 4.1674524 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 153 1.06e-40   NR MBS0647762.1 2026799 g90131 i0 83.9 0.978947368421053 93 15 97.9 0 279 1 1161 1253 MBS0647762.1 autotransporter domain-containing protein [Verrucomicrobiota bacterium] diamond 279 153 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31825114 31825114 PRJNA879067_P_NODE_95077_length_280_cov_1.449275_g91591_i0 PRJNA879067 95077 280 1.449275 4.05797 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 122 4.089999999999999e-31   NR MBI5818678.1 2026799 g91591 i0 64.4 0.964285714285714 90 32 96.4 0 279 10 215 304 MBI5818678.1 ATP-binding protein [Verrucomicrobiota bacterium] diamond 270 122 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32804926 32804926 PRJNA879067_P_NODE_78360_length_346_cov_1.974359_g74874_i0 PRJNA879067 78360 346 1.974359 6.83128214 Prosthecobacter sp. 1965333 Bacteria Bacteria 121 2.6e-29   NR WP_395740529.1 1965333 g74874 i0 60.9 0.953757225433526 110 39 91.9 1 344 27 187 296 WP_395740529.1 PAS domain S-box protein [Prosthecobacter sp.] diamond 330 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
32812901 32812901 PRJNA879067_P_NODE_21440_length_964_cov_19.821549_g18446_i0 PRJNA879067 21440 964 19.821549 191.07973236 Bacteria 2 Bacteria Bacteria 443 3.8899999999999996e-150   NR MBS0645324.1 2026799 g18446 i0 71.8 5.87240663900415 312 88 97.1 0 963 28 8 319 MBS0645324.1 DUF262 domain-containing protein [Verrucomicrobiota bacterium] diamond 5661 443 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;