RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA879067" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA879067 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17434643 17434643 PRJNA879067_P_NODE_93634_length_285_cov_1.452830_g90148_i0 PRJNA879067 93634 285 1.45283 4.1405655 Methanobacterium formicicum 2162 Archaea Archaea 510 3.61e-140   NTclustered gi|952971377|emb|LN734822.1| 2162 g90148 i0 98.947 4 285 3 100 0 1 285 1280514 1280230 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 1140 510 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
19090611 19090611 PRJNA879067_P_NODE_59895_length_450_cov_2.506631_g56410_i0 PRJNA879067 59895 450 2.506631 11.2798395 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 95.9 1.03e-19   NR WP_296846977.1 253161 g56410 i0 39.8 0.886666666666667 133 73 88.7 3 32 430 1063 1188 WP_296846977.1 hypothetical protein [uncultured Methanobrevibacter sp.] diamond 399 95.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
27181529 27181529 PRJNA879067_P_NODE_83042_length_326_cov_2.367589_g79556_i0 PRJNA879067 83042 326 2.367589 7.71834014 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 137 1e-37   NR WP_294007930.1 253161 g79556 i0 100 0.690184049079755 75 0 69 0 227 3 1 75 WP_294007930.1 hypothetical protein [uncultured Methanobrevibacter sp.] diamond 225 137 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32773383 32773383 PRJNA879067_P_NODE_70960_length_383_cov_1.790323_g67475_i0 PRJNA879067 70960 383 1.790323 6.85693709 Methanobrevibacter smithii 2173 Archaea Archaea 64.3 2.41e-9   NR WP_404809095.1 2173 g67475 i0 30 1.89556135770235 130 43 64.2 2 330 85 122 251 WP_404809095.1 hypothetical protein [Methanobrevibacter smithii] diamond 726 64.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;