RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA879067", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 4 ✖

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA879067 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4684596 4684596 PRJNA879067_P_NODE_84184_length_321_cov_2.870968_g80698_i0 PRJNA879067 84184 321 2.870968 9.21580728 Minisyncoccota bacterium 2053589 Bacteria Bacteria 73.2 7.22e-13   NR HEY4483628.1 2053589 g80698 i0 54.5 1.7196261682243 55 25 51.4 0 53 217 183 237 HEY4483628.1 M14 family zinc carboxypeptidase [Candidatus Paceibacterota bacterium] diamond 552 73.2 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28003039 28003039 PRJNA879067_P_NODE_108685_length_244_cov_0.900585_g105199_i0 PRJNA879067 108685 244 0.900585 2.1974274 Minisyncoccota bacterium 2053589 Bacteria Bacteria 48.9 2.47e-4   NR MFA5013053.1 2053589 g105199 i0 34.6 0.995901639344262 81 40 83.6 2 27 230 411 491 MFA5013053.1 polysaccharide deacetylase family protein [Candidatus Paceibacterota bacterium] diamond 243 48.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28571110 28571110 PRJNA879067_P_NODE_93967_length_284_cov_1.208531_g90481_i0 PRJNA879067 93967 284 1.208531 3.43222804 Minisyncoccota bacterium 2053589 Bacteria Bacteria 108 6.0099999999999995e-25   NR HRY51571.1 2053589 g90481 i0 70.5 0.823943661971831 78 23 82.4 0 235 2 3 80 HRY51571.1 DEAD/DEAH box helicase family protein [Candidatus Paceibacterota bacterium] diamond 234 108 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29865713 29865713 PRJNA879067_P_NODE_52771_length_502_cov_4.289044_g49287_i0 PRJNA879067 52771 502 4.289044 21.53100088 Minisyncoccota bacterium 2053589 Bacteria Bacteria 216 1.1e-66   NR HEY5589326.1 2053589 g49287 i0 75.9 0.794820717131474 133 32 79.5 0 421 23 1 133 HEY5589326.1 glycosyltransferase [Candidatus Paceibacterota bacterium] diamond 399 216 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;