RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA879067", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA879067 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26842000 26842000 PRJNA879067_P_NODE_15701_length_1189_cov_18.591398_g13028_i0 PRJNA879067 15701 1189 18.591398 221.05172222 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 273 5.98e-85   NR XP_013754871.1 461836 g13028 i0 46.1 1.89486963835156 369 175 92.9 5 86 1189 8 353 XP_013754871.1 uncharacterized protein AMSG_09158 [Thecamonas trahens ATCC 50062] diamond 2253 275 0.992727272727273 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28918279 28918279 PRJNA879067_P_NODE_10588_length_1514_cov_3.441360_g8430_i0 PRJNA879067 10588 1514 3.44136 52.1021904 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 226 7.09e-61   NR XP_013762411.1 461836 g8430 i0 34.2 0.99669749009247 503 277 95.1 15 1512 73 516 987 XP_013762411.1 uncharacterized protein AMSG_00680 [Thecamonas trahens ATCC 50062] diamond 1509 226 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32331906 32331906 PRJNA879067_P_NODE_33259_length_711_cov_3.194357_g29892_i0 PRJNA879067 33259 711 3.194357 22.71187827 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 137 5.04e-33   NR XP_013757617.1 461836 g29892 i0 43.5 0.708860759493671 168 92 70 2 709 212 4449 4615 XP_013757617.1 HECT domain containing 3 [Thecamonas trahens ATCC 50062] diamond 504 137 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;