RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA876641" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA876641 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6342433 6342433 PRJNA876641_P_NODE_20345_length_245_cov_0.895349_g20271_i0 PRJNA876641 20345 245 0.895349 2.19360505 Rhodothermales bacterium 2306054 Bacteria Bacteria 133 5.31e-35   NR NND70808.1 2306054 g20271 i0 76.9 5.73061224489796 78 18 95.5 0 240 7 215 292 NND70808.1 fumarylacetoacetase [Rhodothermales bacterium] diamond 1404 133 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
30687047 30687047 PRJNA876641_P_NODE_3473_length_400_cov_1.088685_g3399_i0 PRJNA876641 3473 400 1.088685 4.35474 Rhodothermales bacterium 2306054 Bacteria Bacteria 84.3 5.89e-16   NR MFT5138527.1 2306054 g3399 i0 40.5 1.905 131 62 96.8 6 10 396 343 459 MFT5138527.1 choice-of-anchor B domain-containing protein [Rhodothermales bacterium] diamond 762 84.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
32553279 32553279 PRJNA876641_P_NODE_14019_length_259_cov_1.962366_g13945_i0 PRJNA876641 14019 259 1.962366 5.08252794 Rhodothermales bacterium 2306054 Bacteria Bacteria 108 7.99e-26   NR MFT4606032.1 2306054 g13945 i0 61.6 0.996138996138996 86 33 99.6 0 259 2 140 225 MFT4606032.1 4-hydroxybutyrate CoA-transferase [Rhodothermales bacterium] diamond 258 108 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;